PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01622.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 192aa    MW: 22416.3 Da    PI: 4.8571
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01622.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.91.8e-1250110363
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              +lk+ rr ++NR++A+r R ++ ++i+eLe+k+k L+   + L+ke+e+ k++  k+  e+
  Sme2.5_01622.1_g00004.1  50 DLKKFRRTMSNRLSAQRTRMKRTEYIAELEKKAKDLQDTVTLLRKEVENVKDNKHKMLLEN 110
                              689*************************************************999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-1148112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.9950102IPR004827Basic-leucine zipper domain
PfamPF001701.0E-1151110IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.7E-1051105No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-1152106No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKEKRKRSDE PDLNLSVKAP VEHESVNRFP TLEEAVNFEL ENGKVDPNVD LKKFRRTMSN  60
RLSAQRTRMK RTEYIAELEK KAKDLQDTVT LLRKEVENVK DNKHKMLLEN QILQHQLQII  120
TYNSNMRTAQ TEELKAELQM LKELAMAQNG EENVEIEGEI SNSIDFESIE KIDQYLNLDA  180
IDFSPPKNND DI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570RTRMKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165679.13e-67PREDICTED: transcription factor VIP1-like
TrEMBLM1DJC41e-67M1DJC4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000899852e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.14e-11bZIP family protein