PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01649.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 249aa    MW: 27795.6 Da    PI: 9.2335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01649.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-0975122455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Sme2.5_01649.1_g00012.1  75 SHSLAERVRREKISQRMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 122
                              8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1769139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-1069126No hitNo description
PROSITE profilePS5088815.27571121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1671139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-675122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-1077127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQPFTNSKRN NEGSSSLCSA QSKNVREGDD GKKQKKRNGN VKKEKKPKDN KNKAPEEAPT  60
GYVHVRARRG QATDSHSLAE RVRREKISQR MKILQALVPG CDKVTGKALM LDEIINYVQS  120
LQNQVEFLSM KLASLNPMYY DFGMELDALM VKPDQSCCGL EGPLLENTNS IGNPLLDSST  180
SLMFQQFHLP NSISQGTGQV LWSVDDQRQK MIINHSGLIS NNNNLCSFPL IRDQPCPTQH  240
LVSYPSLSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539241e-105HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322508.11e-129transcription factor bHLH137-like
SwissprotQ93W884e-58BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A3Q7H2631e-127A0A3Q7H263_SOLLC; Uncharacterized protein
STRINGSolyc06g072520.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]