PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01674.1_g00016.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 101aa MW: 11583.1 Da PI: 11.0956

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01674.1_g00016.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.3	4.2e-25	6	84	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+++++w+fF++ + ++a+g r++r t++gyWkatg+ v+s+ +++ +g k+t+vfykgrap+g+kt+W m+ey++ Sme2.5_01674.1_g00016.1 6 IKNDSEQWFFFIPIQDREARGGRPTRLTTQGYWKATGTPGFVFSSnNNRIIGGKRTMVFYKGRAPNGKKTQWKMNEYKA 84 566788***********************************9867778*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.5	1	101	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-25	7	89	IPR003441	NAC domain
Pfam	PF02365	3.6E-11	12	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MAGEVIKNDS EQWFFFIPIQ DREARGGRPT RLTTQGYWKA TGTPGFVFSS NNNRIIGGKR 60 TMVFYKGRAP NGKKTQWKMN EYKASTQRDP SINNNHPTNL K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-15	11	83	71	141	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-15	11	83	71	141	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-15	11	83	71	141	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-15	11	83	71	141	NO APICAL MERISTEM PROTEIN
3swm_A	9e-15	11	83	74	144	NAC domain-containing protein 19
3swm_B	9e-15	11	83	74	144	NAC domain-containing protein 19
3swm_C	9e-15	11	83	74	144	NAC domain-containing protein 19
3swm_D	9e-15	11	83	74	144	NAC domain-containing protein 19
3swp_A	9e-15	11	83	74	144	NAC domain-containing protein 19
3swp_B	9e-15	11	83	74	144	NAC domain-containing protein 19
3swp_C	9e-15	11	83	74	144	NAC domain-containing protein 19
3swp_D	9e-15	11	83	74	144	NAC domain-containing protein 19
4dul_A	8e-15	11	83	71	141	NAC domain-containing protein 19
4dul_B	8e-15	11	83	71	141	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	1e-112	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015161530.1	3e-62	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9M290	4e-36	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	A0A3Q7HZI4	1e-59	A0A3Q7HZI4_SOLLC; Uncharacterized protein
STRING	Solyc09g010160.1.1	8e-59	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.1	2e-38	NAC domain containing protein 61