PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01684.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARR-B
Protein Properties Length: 556aa    MW: 63554.4 Da    PI: 6.5124
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01684.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like57.72.6e-18226276556
                  G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               W ++LH++F+eav+q+ G+ek  Pk+ile+m+ ++Lt+ +v+SHLQ  Rl+
  Sme2.5_01684.1_g00005.1 226 LWDNDLHAKFMEAVDQI-GKEKCHPKEILEIMNTPDLTRGQVASHLQSCRLH 276
                              5****************.******************************9986 PP
2Response_reg33.91.6e-12301331105
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              v++vdD++ +   +  +l++ gy +v+++ + + a+ +l  +++++D+i++    ++m  l+ll +  + +  +  ++v ++ +e 
  Sme2.5_01684.1_g00005.1  30 VMLVDDDNEFITKMIDFLKSYGY-KVTTVCTTSVAMSMLfkEKEKIDVIIINSHSSDMLSLDLLAKTVAMD--IISLFVCDEHNEL 112
                              89*********************.888888888888887555556*************9999999876655..7777777888889 PP

                              HHHHHHHTTESEEEESS--HH CS
             Response_reg  85 dalealkaGakdflsKpfdpe 105
                               a++al+ Ga  ++ +pf++e
  Sme2.5_01684.1_g00005.1 113 VAKKALQEGAYLCINNPFEKE 133
                              *****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-1227152No hitNo description
SuperFamilySSF521721.71E-1327158IPR011006CheY-like superfamily
PROSITE profilePS5011020.14329143IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.2E-630133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.17E-531133No hitNo description
SuperFamilySSF466895.73E-12221276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-18222276IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-18226276IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MFEEENSQTI EQIDNRMVAP YYGLIEEVRV MLVDDDNEFI TKMIDFLKSY GYKVTTVCTT  60
SVAMSMLFKE KEKIDVIIIN SHSSDMLSLD LLAKTVAMDI ISLFVCDEHN ELVAKKALQE  120
GAYLCINNPF EKEIMKYLWQ FVLRKQMKKH KMREQLKMKR DEIMNVADIS TEIQRNDIQD  180
VKNNVSSNEK NKLTMKRDRK NTNEIGGKES QNSDISMVIR KRACTLWDND LHAKFMEAVD  240
QIGKEKCHPK EILEIMNTPD LTRGQVASHL QSCRLHNWKN AEDQKATRHP SRKRSSNSCR  300
QNKSFQKVGR TSFLQANVPN LQHNTNQTQN FREFSFPTLN SNKVFLGGES PTQQPYHPQL  360
QAESQYPTIG NPFCNPFLST QSNFKSGLQQ QHGLLFGMQD PQGLQKTVTE NASYRPNLAF  420
NSGYHNSLGD CNLNNNVSHG ATYSGCKAIS NTHIGNPIFH DNNLNANANN VTTRLGRGMI  480
LDTRDENTSS HELGGININV QQDRSLSKMS NSSNEVVASY EREIEESNAI EKEIWDAYFD  540
FNNIDYLSQD PEPPTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886280.11e-171two-component response regulator ARR1-like
STRINGSolyc04g051080.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-22response regulator 1