PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01699.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 330aa    MW: 37322.6 Da    PI: 9.6996
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01699.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.81.4e-1838130186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekk....rtsessstc 79 
                              +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ +         ++++qC++k+e+l+kry+++ +++      r+ +  s +
  Sme2.5_01699.1_g00003.1  38 CWSHEETIALIDAYRDKWYSLRRGNLRANHWQEVADDVgskCPVDPPKTAVQCRHKMEKLRKRYRAEIQRAAPyggvRSHRYCSAW 123
                              8*************************************6333344489*****************998887641111244455667 PP

                 trihelix  80 pyfdqle 86 
                              ++f++++
  Sme2.5_01699.1_g00003.1 124 VHFKRMD 130
                              7777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2037132No hitNo description
PROSITE profilePS500906.43998IPR017877Myb-like domain
SMARTSM005951.6E-1146137IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MATLSPSTQD FSNVTPAQIL PSANVTVAVA SRRLPPPCWS HEETIALIDA YRDKWYSLRR  60
GNLRANHWQE VADDVGSKCP VDPPKTAVQC RHKMEKLRKR YRAEIQRAAP YGGVRSHRYC  120
SAWVHFKRMD MMERGPDAVS PPPSDDEADE DVGDYHQNSV KLGEDLYGNN GNTSNRSSFQ  180
GVVSNGGGGF RIRIPGMPGL APPMAKPYRR YEDSGFEIPD NFGSSKMFRD GFVKKADLGK  240
RVVGEGVGEK KKGDPMAEMV AAIKVLGDGF VRMERMKMET ARELERMRMD MEMKRTEMMF  300
ESQRRIVEAF AQALWEKKHK KAKRMPTPDC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059985.10.0trihelix transcription factor ASIL2
TrEMBLA0A0V0IK790.0A0A0V0IK79_SOLCH; Putative trihelix transcription factor ASIL2-like
STRINGPGSC0003DMT4000042690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-48Trihelix family protein