PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01714.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22467.7 Da    PI: 7.5958
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01714.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-17959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ie+ + r+  +skR+  i KKA+EL +LC+++va+++fs+t+++  yss
  Sme2.5_01714.1_g00001.1  9 KKIEDPISRHQFYSKRKDNIVKKANELAILCETDVALLMFSPTDQVTSYSS 59
                             689*********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.782161IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-21275IPR002100Transcription factor, MADS-box
CDDcd002666.02E-19280No hitNo description
PRINTSPR004041.9E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRNKLVMKK IEDPISRHQF YSKRKDNIVK KANELAILCE TDVALLMFSP TDQVTSYSSR  60
GSIEDVMLHV INQPNELNKR SIPEEQHLMQ SLIQSKDEGE MVQKIAMYAT LLVLFFFGWY  120
YEPQVENISS VQEVDAYKQF LMSAMGRIQQ SKAKLLGGEG FLQNGKVTSV NTEDAAAAGT  180
SMGWKLRGNR PNSGGEVAAG I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402905e-56AC240290.1 Solanum tuberosum chromosome 7 clone RHPOTKEY032K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360573.13e-77PREDICTED: agamous-like MADS-box protein AGL66 isoform X2
TrEMBLA0A1U8HJH49e-75A0A1U8HJH4_CAPAN; agamous-like MADS-box protein AGL66 isoform X2
STRINGXP_009776411.17e-71(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.18e-21AGAMOUS-like 66