PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01746.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 651aa    MW: 71252.3 Da    PI: 6.67
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01746.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.13.6e-1072846513374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              + ++e+A+a+s+g++  a ++L+rls+ a+ +g++ qRl+ay++ AL++r++      ++  pp  +   +s e++  ++ ++evs
  Sme2.5_01746.1_g00005.1 284 QSIIEAATAISEGKTDVAVEILTRLSQVANVRGSSDQRLTAYMVAALRSRVNP-----SDYPPPVLE--LHSREHTDTTHNLYEVS 362
                              6789************************************************9.....333333333..357888888889***** PP

                     GRAS  89 PilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAee 171
                              P++k+++++aN aIleav+ +  +++H+iDfdi+qG+Q++ Ll+aLa+++ ++p+ l+iT++ ++  g  e+l+++g  L+ +A++
  Sme2.5_01746.1_g00005.1 363 PCFKLGFMAANLAILEAVSDHpfNKLHVIDFDIGQGGQYLHLLHALAAKKsDKPAVLKITAFTEQPGGVDERLNSIGVELKAVANQ 448
                              ********************999************************77736666*********6666****************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              +gv + fn+ +a +++dl+ e+L ++p++alaVn++++l+rl+desv++e+ rd++L+ vk lsPkvv++veqe++ n+++Fl+r+
  Sme2.5_01746.1_g00005.1 449 VGVCLYFNI-AACKVTDLSREKLGIDPDDALAVNFAFKLYRLPDESVTTENLRDDLLRRVKVLSPKVVTLVEQEMNGNTAPFLARV 533
                              ********9.899************************************************************************* PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                               ea+ +y a+fdsl+a+++r+s er+ +E+  l+r+ +n vaceg++r+er+e ++kWr+r+++aGF+p p+s+ +a++ ++ l+ 
  Sme2.5_01746.1_g00005.1 534 NEACGHYGAIFDSLDATVSRDSLERVRIEEG-LSRKMSNSVACEGRDRVERCEMFGKWRARMSMAGFGPRPISQLVANSLNSKLNS 618
                              *******************************.*********************************************999998886 PP

                     GRAS 344 vk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  + g++v+e+sg +++gWk+r+L+++SaWr
  Sme2.5_01746.1_g00005.1 619 GTrgNPGFTVNEHSGGICFGWKGRTLTVASAWR 651
                              5546899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.494256629IPR005202Transcription factor GRAS
PfamPF035141.2E-104284651IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MSSGFSGEFY GAGGINNGRT TMNNNSNNLL RPQAQDQLPY SSPLSGILPD PVTQIVQGRP  60
NLMGKRSLAE FQQQQQLQFL QQQQKQQQMI LLQQQQGLGF YLRNVKPRNY QQASPLSPVD  120
FSVAAAAAAS ISSEFSSNSN ASTMMNTRHP LPVLQQLRSQ PANINGFLSP GIQNYSTGVS  180
SLNPVQNRAT IGVQELLSQE SDKKMMNCLQ ELEKQLLDDN DEEEGDTVSV VTNNEWSETI  240
QNLISPCQNQ NQNQIQKLAS LSPSSSTSSC ASSTESPPIS CPKQSIIEAA TAISEGKTDV  300
AVEILTRLSQ VANVRGSSDQ RLTAYMVAAL RSRVNPSDYP PPVLELHSRE HTDTTHNLYE  360
VSPCFKLGFM AANLAILEAV SDHPFNKLHV IDFDIGQGGQ YLHLLHALAA KKSDKPAVLK  420
ITAFTEQPGG VDERLNSIGV ELKAVANQVG VCLYFNIAAC KVTDLSREKL GIDPDDALAV  480
NFAFKLYRLP DESVTTENLR DDLLRRVKVL SPKVVTLVEQ EMNGNTAPFL ARVNEACGHY  540
GAIFDSLDAT VSRDSLERVR IEEGLSRKMS NSVACEGRDR VERCEMFGKW RARMSMAGFG  600
PRPISQLVAN SLNSKLNSGT RGNPGFTVNE HSGGICFGWK GRTLTVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-412846516375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353907.10.0PREDICTED: scarecrow-like protein 8
TrEMBLM1AMW70.0M1AMW7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000262400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-146SCARECROW-like 8