PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01813.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 367aa    MW: 42512.8 Da    PI: 9.8826
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01813.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.8e-112731994
                             -HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3 19 pkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                             p  f++eh++    skt  l++ esg sWe ++ +rkks+ ++ ++ W +Fv  ++L+ gD+++F l+++s+f   v
  Sme2.5_01813.1_g00005.1  2 PPCFVKEHKHM--LSKTCLLKSnESGMSWEANI-VRKKSNYFICEGEWTQFVVHHQLELGDVLLFFLVDKSTF--QV 73
                             67799999644..77788888879*********.7999999999999*******************9987777..44 PP
2B338.61.9e-122773571496
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                                +++pk+fa   g+++   k+++l +e+g++W++  i   +++r+++++GW +F   n++  g ++ Fkl++  s+++ v++v
  Sme2.5_01813.1_g00005.1 277 IFMTIPKRFAVWTGIIN--MKKMRLVNEKGNEWKLVDI-VHTRQRVFMKGGWAKFRTLNKIAYGQTCRFKLIKGnSCGNNVLQV 357
                              4589******8889884..558************8874.7777899************************99665999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.38E-7177No hitNo description
PROSITE profilePS5086314.085179IPR003340B3 DNA binding domain
PfamPF023622.7E-8273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-13278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-12277IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0053579IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-5147206IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-5147207IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-13260359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-13261359IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.657264363IPR003340B3 DNA binding domain
CDDcd100174.89E-7265350No hitNo description
SMARTSM010190.0022267363IPR003340B3 DNA binding domain
PfamPF023627.8E-11277357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPPCFVKEHK HMLSKTCLLK SNESGMSWEA NIVRKKSNYF ICEGEWTQFV VHHQLELGDV  60
LLFFLVDKST FQVLAYNQKS DDNFNRNQLF EELSCSSGEK QDAVRKSMRV KTEQIESSGS  120
VAEEEDVESG NEENGPKKIR FGMVNLNNKD PYYEAVIKKS HSIHMTIPVN FARWTGIIGM  180
KRMRLENGKG KEWQVDIERK RGRGVFQELS NSSEEEREAG IARKLKKIKM EPNESSEEEE  240
AEDGNEENGP KKTRFSVVNI KNKDPYYETV VRKTHSIFMT IPKRFAVWTG IINMKKMRLV  300
NEKGNEWKLV DIVHTRQRVF MKGGWAKFRT LNKIAYGQTC RFKLIKGNSC GNNVLQVQKI  360
PKPKCLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558925.12e-84PREDICTED: B3 domain-containing protein At5g18000-like
TrEMBLA0A0V0HSN22e-97A0A0V0HSN2_SOLCH; Putative ovule protein
STRINGSolyc02g065340.1.12e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-08B3 family protein