PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01867.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 215aa    MW: 24205.2 Da    PI: 5.7128
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01867.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB124.93.1e-3947140295
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              reqd+f+Pi+nv+rim+k+lP +aki +d+k ++qecvsefisf+t+ea+d+c+r++ kti+++d++ a+++ Gf d +epl++yl
  Sme2.5_01867.1_g00005.1  47 REQDQFIPITNVIRIMHKILPLHAKIDDDSKISIQECVSEFISFITCEANDHCHRDQCKTITTEDVIQAMSNHGFADNIEPLTLYL 132
                              89************************************************************************************ PP

                    NF-YB  88 kkyreleg 95 
                              + y   +g
  Sme2.5_01867.1_g00005.1 133 HCYCAYDG 140
                              **987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-3740149IPR009072Histone-fold
SuperFamilySSF471131.23E-2649147IPR009072Histone-fold
PfamPF008084.7E-1952116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-68098No hitNo description
PRINTSPR006152.6E-699117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEDFRTRSTQ PTAACSLSPA TETKRELPAQ LYQAIAANGQ NSECTIREQD QFIPITNVIR  60
IMHKILPLHA KIDDDSKISI QECVSEFISF ITCEANDHCH RDQCKTITTE DVIQAMSNHG  120
FADNIEPLTL YLHCYCAYDG GKRESTRRKP LLLKHPIVHL PTNFQMAHHQ YGYFVFPQVI  180
CHGCMQGDAS NVSTSQYAAV DVDSEVESPA KESNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-4241135195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168332.13e-76PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_015168333.13e-76PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1
TrEMBLM1B1U52e-68M1B1U5_SOLTU; Uncharacterized protein
STRINGSolyc10g009440.2.17e-69(Solanum lycopersicum)
STRINGPGSC0003DMT4000351174e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-47nuclear factor Y, subunit B6