PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01874.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 216aa    MW: 23832.6 Da    PI: 5.202
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01874.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.82.9e-231461249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             ri+n+snrqvtfskRr+g++KKA+E++++Cda  a+++f+s++k y y
  Sme2.5_01874.1_g00008.1 14 RISNDSNRQVTFSKRRTGLFKKASEICTMCDATCAIVVFASNDKPYSY 61
                             8******************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.647565IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-28564IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-25678IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-18727IPR002100Transcription factor, MADS-box
PfamPF003194.0E-231461IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-182742IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-184263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRRPGGRRRL PMDRISNDSN RQVTFSKRRT GLFKKASEIC TMCDATCAIV VFASNDKPYS  60
YVHPSVELSI DRYLGVDPPV DANAAHPSVV AHRNASADRL NNKLNKLVKL HEDEKKYGKE  120
LKAMRKEPPN DELDLLSLTK LCEALEAADK EVERVVNHNK ELGIKYPYQT LGSAFAPLRA  180
EENILPDSDS DGDGLSDSDG NGDGDEGSSD SDEVVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340409.12e-64PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DU305e-63M1DU30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000944079e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-26AGAMOUS-like 61