PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01901.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 527aa    MW: 59450.1 Da    PI: 9.6458
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01901.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22112214199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+ltpsd+++ g +++p+ +a+++       + ++ +   l ++d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+
  Sme2.5_01901.1_g00007.1 112 FVKILTPSDANNGGGFSVPRFCADSIfprlnflDDPPVQ--NLAFRDIHGGVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLVSGDS 195
                              89*********************999*****98777777..6******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                               vF ++  ++ +l+v+v+r+
  Sme2.5_01901.1_g00007.1 196 AVFIRKT-RNDQLYVGVRRA 214
                              ****765.55558****996 PP
2Auxin_resp85.61e-28260343183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              +a+ a+ + +Fev  +Pra +++Fvvk++ ve++l+++++vGmR+kma+etedss+  + +Gtv++v   ++  W++S+Wr+L+
  Sme2.5_01901.1_g00007.1 260 VAEMAARGVPFEVSCYPRADWADFVVKAQAVETSLNIHWTVGMRVKMAVETEDSSRMACfQGTVSSVISPESGPWRGSPWRMLQ 343
                              5788999***************************************************99**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-32101223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-28103219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.85E-18111213No hitNo description
PROSITE profilePS5086311.984112215IPR003340B3 DNA binding domain
PfamPF023622.4E-20112214IPR003340B3 DNA binding domain
SMARTSM010197.3E-19112215IPR003340B3 DNA binding domain
PfamPF065076.4E-27261343IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MHSPTAAGNE VDPSVWRAIA GKYVKIPPVG SRVYYFPQGH AEHAVSGSSA VLSPGIPPFV  60
LCRVLSVRFL ADSVTDEAFA KILLHPISQS DVDDVSVNEE EEEDSENEVV SFVKILTPSD  120
ANNGGGFSVP RFCADSIFPR LNFLDDPPVQ NLAFRDIHGG VWDFRHIYRG TPRRHLLTTG  180
WSKFVNSKKL VSGDSAVFIR KTRNDQLYVG VRRAIRGNDN CQSWTSSFWG REAISRLGSS  240
GEVRWRTGKG RMTMEAVVAV AEMAARGVPF EVSCYPRADW ADFVVKAQAV ETSLNIHWTV  300
GMRVKMAVET EDSSRMACFQ GTVSSVISPE SGPWRGSPWR MLQEVGNLSV AYKRLSCADS  360
SLSMPHLSLI SKIHYFGESV MHPLTFLKSL SNIDDIVLID ETWTKVNDRL EAWRHALESK  420
GFKLSRTKTE YLECKFCVIR RSLNSKKMYV AEMRMLRWMC GHSMSDKVKN ETIREKLEVV  480
LVADKMRESR LRWFGHMQRR SADAPVRKCA RLVLEATQRG RGRSKKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-571135951377Auxin response factor 5
4ldy_A9e-581534323332Auxin response factor 1
4ldy_B9e-581534323332Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569868.10.0PREDICTED: auxin response factor 17
RefseqXP_016569869.10.0PREDICTED: auxin response factor 17
RefseqXP_016569870.10.0PREDICTED: auxin response factor 17
RefseqXP_016569871.10.0PREDICTED: auxin response factor 17
RefseqXP_016569873.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU61e-119ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2G3CMA60.0A0A2G3CMA6_CAPCH; Auxin response factor
STRINGXP_009791106.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-113auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]