PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01937.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29121.7 Da    PI: 7.7848
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01937.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18116170256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++tk+q   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  Sme2.5_01937.1_g00009.1 116 RKKLRLTKTQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 170
                              788899***********************************************98 PP
2HD-ZIP_I/II124.26e-40116205191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+k q++lLEesF+ +++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +e
  Sme2.5_01937.1_g00009.1 116 RKKLRLTKTQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQE 201
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              L+ +l
  Sme2.5_01937.1_g00009.1 202 LK-AL 205
                              *9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-18103173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-17106166IPR009057Homeodomain-like
PROSITE profilePS5007117.491112172IPR001356Homeobox domain
SMARTSM003891.5E-15114176IPR001356Homeobox domain
CDDcd000861.36E-16116173No hitNo description
PfamPF000466.7E-16116170IPR001356Homeobox domain
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PfamPF021839.8E-11172206IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.2E-25172215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGFDDICNTG LVLGLGFSST ADHKSSRKIT KGPSLGFEPS LTLSLISGDG TYEQPPIKDH  60
HEPADLYRQD SGGASSYSNA SVKRERDVGS EETTTEVERV SSRVISDEDD DGSNSRKKLR  120
LTKTQSALLE ESFKIHSTLN PKQKQDLARE LNLRPRQVEV WFQNRRARTK LKQTEVDCEF  180
LKKCCETLTD ENRRLHKELQ ELKALKIAQP LYMQLPAATL TMCPSCERIG GGVGENQSKN  240
AFTIAQKPHF FSPFNNPSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120SRKKLRL
2164172RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9989720.0EU998972.1 Capsicum annuum homeodomain leucine-zipper 1 (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363789.11e-165PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-96HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0V0HTW91e-164A0A0V0HTW9_SOLCH; Putative homeobox-leucine zipper protein HAT22-like
TrEMBLM1BXI91e-164M1BXI9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551991e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-96HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]