PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01943.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 181aa    MW: 20513.8 Da    PI: 10.7286
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01943.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC53.36.2e-17581431498
                    NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 
                               ++++ ++P++r+kki+k d+d+++i +ea  l++ + +lf+  l+ +s   a e+kr+t+k   +  av+r + + dfl+d  p 
  Sme2.5_01943.1_g00009.1  58 GEIQQLQIPVSRVKKIMKLDQDINKINSEALHLIASSTQLFLELLAEKSAQVALEKKRKTIKLEHLRVAVKRHQpVSDFLLDSLPM 143
                              678999***********************************9999*************************9976488*****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-1961128IPR009072Histone-fold
SuperFamilySSF471138.83E-2061145IPR009072Histone-fold
PfamPF008088.0E-1964127IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MESTNFLQSW KAARQKLIPA KFRSLKSQCR LQLLSMSRVS TFDTMAEEDT EGNSTVAGEI  60
QQLQIPVSRV KKIMKLDQDI NKINSEALHL IASSTQLFLE LLAEKSAQVA LEKKRKTIKL  120
EHLRVAVKRH QPVSDFLLDS LPMSSHPADR SPKVQSRPRL STDKALPSGN RRIEAFFQKC  180
T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-157HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239516.23e-83nuclear transcription factor Y subunit C-2
TrEMBLA0A3Q7GII18e-82A0A3Q7GII1_SOLLC; Uncharacterized protein
STRINGSolyc05g015330.1.11e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-45nuclear factor Y, subunit C13