PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01982.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 195aa    MW: 21854.8 Da    PI: 9.9155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01982.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.4e-135599347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rW+++E+  ++ +  +lG+g+W++Ia+ +   Rt+ q+ s+ qky
  Sme2.5_01982.1_g00005.1 55 RWSEDEHRAFLIGLDKLGKGNWTAIAKQFVPSRTPTQVASHAQKY 99
                             9****************************99*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.29948104IPR017930Myb domain
SuperFamilySSF466893.8E-1651105IPR009057Homeodomain-like
SMARTSM007171.6E-952102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-125299IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-1553103IPR006447Myb domain, plants
CDDcd001674.03E-955100No hitNo description
PfamPF002491.0E-105599IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAKEISSVAR TGEYDSRNKK ETIKLFGVEI NVNNVCSSGE ESTSSSCSSG TKGRRWSEDE  60
HRAFLIGLDK LGKGNWTAIA KQFVPSRTPT QVASHAQKYF ERQKKEKTLK RNKCSIFDIN  120
LDKESSNTCT ELVITVPLKE KNNKGKQALG PISAMPISYR LPPNYVVPMT NYQFNFVTSP  180
INATPVHRDD LHLTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168973.12e-76PREDICTED: transcription factor MYB1R1-like
TrEMBLM1DC734e-75M1DC73_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000866417e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-26MYB_related family protein