PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02000.1_g00015.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 951aa    MW: 106746 Da    PI: 4.9026
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02000.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-14853248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Sme2.5_02000.1_g00015.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                             78*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
SuperFamilySSF466891.35E-13459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-17559IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF002491.1E-11853IPR001005SANT/Myb domain
CDDcd001673.84E-121053No hitNo description
PfamPF118311.6E-57342584IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKP  60
GEIDPNPESK PARPDPVDMD EDEKEMLSEA RARLANTRGK KAKRKAREKQ LEEARRLASL  120
QKRRELKAAG IDVRQRKRKR RGIDYNAEIP FEKKPPPGFY DVTEEDRPVE QPKFPTTIEE  180
LEGERRVDKE ARLRKQDIAR NKIAERQDAP TSILHANKLN DPEAVRKRSK LNLPAPQIPD  240
HELEAIAKIG IASDLMGGDE MSEGNAATRA LLANYAQTPQ HAMTPVRTPQ RTPSSKQDAI  300
MMEAENQRRL TQSQTPLLGG DNPLLHPSDF SGVTPKKREV QTPNPLLTPS ATPGATSFTP  360
RIGMTPSRDS YGMTPKGTPM RDELHINEEM DMHNNAKVGQ FNSKKELLSG LRSLPQPKNE  420
YQIVIQQPPE ENEEPEERIE EDMSDRIARE KAEEEARRQA LLRKRSKVLQ RELPRPPIAS  480
LELIKSSLMR ADEDKSSFVP PTLIEQADEM IRKELVSLLE HDNTKYPLDG KPEKEKKKGV  540
KRKMVAETAI EDFEEDELKE ANGLIKDEAQ FLRVAMGHEN ESLDEFVEVH KTTLNDIMYF  600
PTRNAYGLSS VAGNMEKLAA LQNEFENVKK KMDDDTKKAA KLEQKIKVLT NGYQMRAGKL  660
WSQIESTFMK MDTAGTEREC FGALQKQEQL AASHRINNMW EEVQKQKELE RTLQKRYGDL  720
IEEKQKIQQL MDEYRLQAQM QEEIAAKNRA LELAKAEMAE KESVPSADDV EPSGTGQCSN  780
TEENSSSTCH VPIEADVHVE PSGTNTEENS APIEADNVHV EPSGTVQCPI AEETSASASD  840
DETPQGVEGQ VKMGDVSTMD AEAISDHVPM EGQQNPVEAS NMDVTVTEDS KVAAGDVDVA  900
KTEEDYKVAA GDVDVAKTEE DSKVAAGDMD VAKTEDSKVV AVDGEPDPEN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-16427283799Cell division cycle 5-like protein
5xjc_L1e-16427283799Cell division cycle 5-like protein
5yzg_L1e-16427283799Cell division cycle 5-like protein
5z56_L1e-16427283799Cell division cycle 5-like protein
5z57_L1e-16427283799Cell division cycle 5-like protein
5z58_L1e-16427283799Cell division cycle 5-like protein
6ff4_L1e-16427283799Cell division cycle 5-like protein
6ff7_L1e-16427283799Cell division cycle 5-like protein
6icz_L1e-16427283799Cell division cycle 5-like protein
6id0_L1e-16427283799Cell division cycle 5-like protein
6id1_L1e-16427283799Cell division cycle 5-like protein
6qdv_O1e-16427283799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121140KRRELKAAGIDVRQRKRKRR
2134140QRKRKRR
3135140RKRKRR
4536543KKGVKRKM
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0954960.0EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073427.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLM1ATK60.0M1ATK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000299530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]