PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02005.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 329aa    MW: 36597.6 Da    PI: 5.3521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02005.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019186208123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+k+F++   L  H  +H
  Sme2.5_02005.1_g00009.1 186 YRCETCNKVFRSYQALGGHRASH 208
                              9***********99999998887 PP
2zf-C2H211.90.00067233255123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp C ++Fs+   L  H r+H
  Sme2.5_02005.1_g00009.1 233 HECPVCYRVFSSGQALGGHKRSH 255
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.7E-5230No hitNo description
SMARTSM003551.1527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139122.3E-5728IPR007087Zinc finger, C2H2
SMARTSM003550.014186208IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.6E-9186255No hitNo description
PfamPF139127.5E-12186210IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SMARTSM003550.22233255IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328233255IPR007087Zinc finger, C2H2
PfamPF139125.9E-13233255IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEKHKTCKLC SRMFVNGRAL GGHMRSHMMN EKQINDETES IPSSSWSEEE ENGEKGKFLN  60
LDDADDSVVV LPDKESEAES SKNPTRSRRS NRARKSRKPN FVKITEYYSS VVETEPVSSI  120
SENSPEEDVA HCLMMLSRDK WARKEQVDFY SDEDEDGDDD EENSDDSAGG GVQVKVLKKT  180
RGRGKYRCET CNKVFRSYQA LGGHRASHKK IKVTNEVVES GRDNNVVVEE KIHECPVCYR  240
VFSSGQALGG HKRSHNIGAA VATSVNLLPP PPPADVVSSA KLEFSRTGGT SLIDLNFPPP  300
MEEDDEIISQ VAVSAVSDAE FVNPIKNQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347910.11e-174PREDICTED: zinc finger protein ZAT9-like
TrEMBLM1CGE91e-173M1CGE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000669391e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-55C2H2-like zinc finger protein