PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02027.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 280aa    MW: 32395.8 Da    PI: 8.6393
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02027.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.7e-12108152347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+ E++l++ + +++G+g+Wk+I+++    +t  q+ s+ qky
  Sme2.5_02027.1_g00003.1 108 PWTEGEHQLFLMGLNKFGKGDWKSISKYYVVSKTSTQVASHAQKY 152
                              7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.782101157IPR017930Myb domain
SuperFamilySSF466896.8E-15103157IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16105155IPR006447Myb domain, plants
SMARTSM007171.3E-6105155IPR001005SANT/Myb domain
PfamPF002491.6E-10108152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-8108152IPR009057Homeodomain-like
CDDcd001671.89E-8108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDWPEFLESS IPQEPMLHLF GASSHNNCEV LGQADQWTPE EKRHFENAFS RYNNSDVEMA  60
NSINNNDVIV IADDDHHHQV IEEDNPSLND VPPQAENSHS RRRRREIPWT EGEHQLFLMG  120
LNKFGKGDWK SISKYYVVSK TSTQVASHAQ KYFCRRNSQI PVDRHRPSIN DIQTVTLTPK  180
RKTTSPLMIN NNILAYNNNF HVGSSSMPFH YPNYYPFGGP TFTNNSNRNF GRYHRGEASS  240
RNSFVMERNN NNNNNLQRPK SPRPFLSMYL SSIKGNNPQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154523e-49AC215452.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0033D19, complete sequence.
GenBankHG9755143e-49HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233758.11e-91transcription factor SRM1-like
TrEMBLK4BAA92e-90K4BAA9_SOLLC; Uncharacterized protein
STRINGSolyc02g082390.1.14e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-27MYB family protein