PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02029.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 341aa    MW: 39499.1 Da    PI: 6.1026
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02029.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13135224198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k+   s+  ++++l +    a+++ ++   s  + le ++g+ Wev++   +++g++ l kGWkeF + + +  g f vF+++ 
  Sme2.5_02029.1_g00001.1 135 FCKII--SSLDELCLLKILEVSANKYYKD--ISNLVFLEAPHGKAWEVEV--VRSQGQICLIKGWKEFSDHHSISIGHFWVFRYNA 214
                              67777..8888999999999999888544..6779***************..9*******************************98 PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                              r  f  +++v++
  Sme2.5_02029.1_g00001.1 215 RAHF--RITVID 224
                              7777..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.32168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-8968IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-91168IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-16133226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-15134226IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0039135226IPR003340B3 DNA binding domain
PfamPF023622.8E-10135223IPR003340B3 DNA binding domain
CDDcd100172.85E-8166224No hitNo description
PROSITE profilePS5086311.068166226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLTKTCLLKM NMAGIWWKAK IVREKPNYFI CEEDWPQFVL HHQLKEGDIL LFFLVEKSMF  60
HVQPYTKKCY KNIVHERQVL YEKLSSSSEE ETTKPSKRAR KIVTSEKRSV GMSSSVMVHK  120
FPGSPSSTGI LYNMFCKIIS SLDELCLLKI LEVSANKYYK DISNLVFLEA PHGKAWEVEV  180
VRSQGQICLI KGWKEFSDHH SISIGHFWVF RYNARAHFRI TVIDQNDEEI EYPIESDSSL  240
DILDHFTENL SDGPLAEKRK RKRPEGQEEH DIPIDIQTNA IVIEEEEEYI SVNLQTNDNI  300
IREEESQVKK ASLLIYMILT QYKEVGETNS GSGEDGPKNN S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256263EKRKRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158392.12e-65PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBLM1DLV32e-52M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910923e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-13B3 family protein