PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02039.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 661aa    MW: 72798 Da    PI: 6.7072
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02039.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.51e-2960144187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW++qe+ aL+++r+em+  +r+++lk+plWeevs+km++ g++rs+k+Ckek+en+ k++k++k+g+ ++   + +++++f+qle
  Sme2.5_02039.1_g00002.1  60 RWPRQETIALLKIRSEMDVVFRDSSLKGPLWEEVSRKMADLGYHRSAKKCKEKFENVYKYHKRTKDGRASK--ADGKNYRFFEQLE 143
                              8********************************************************************95..67778*******8 PP

                 trihelix  87 a 87 
                              a
  Sme2.5_02039.1_g00002.1 144 A 144
                              5 PP
2trihelix105.14.9e-33476561187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k ev aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+
  Sme2.5_02039.1_g00002.1 476 RWPKAEVEALIKLRTSLDVKYQENGPKGPLWEEISAGMRKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PDDSKTCPYFHQLD 560
                              8*********************************************************************8.99***********8 PP

                 trihelix  87 a 87 
                              a
  Sme2.5_02039.1_g00002.1 561 A 561
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.00453117IPR017877Myb-like domain
SMARTSM007170.001957119IPR001005SANT/Myb domain
CDDcd122032.42E-2659124No hitNo description
PfamPF138374.0E-1959145No hitNo description
PROSITE profilePS500907.375469533IPR017877Myb-like domain
SMARTSM007172.2E-4473535IPR001005SANT/Myb domain
CDDcd122036.30E-29475540No hitNo description
PfamPF138371.4E-22475562No hitNo description
Gene3DG3DSA:1.10.10.604.0E-4475532IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MLGVSGIISE SGGGGENPES GGGAGSGGSS EIGLGGGGGG GSSSGGFMAE EGERNSGGNR  60
WPRQETIALL KIRSEMDVVF RDSSLKGPLW EEVSRKMADL GYHRSAKKCK EKFENVYKYH  120
KRTKDGRASK ADGKNYRFFE QLEALENITS HHSLMPPSNS RPPPPPLEAT PINMAMPMAT  180
SNVQVPASQG TTSHLHVTVS SAPPAAPPPN NLFAPSHQNV PLSSSVALPP SQSSPQPAVN  240
PINNIPPQQV NATNLPSHQN ISAMPYSTSS STSSDEDIQR RHKKKRKWKD YFEKFIKDVT  300
NKQEESHRRF LEKLEKREHD RMVREEAWKV QEMARMNREH DLLVQERAVA AAKDAAVISF  360
LQKITEQQNI QIPNSINIAP PSTQVQTQLP ENPPPAPTHS PQPHQQTQPT ITVSPTPPPA  420
SAPVPVSLPM TIPSSVPALI QSFSLPVTPT VPTKNIELPP KSDNGGDNYS PASSSRWPKA  480
EVEALIKLRT SLDVKYQENG PKGPLWEEIS AGMRKIGYNR NAKRCKEKWE NINKYFKKVK  540
ESNKKRPDDS KTCPYFHQLD ALYKEKAKNP ETTSSTSSFN PSFALNPETN PMAPIMARPE  600
QQWPLPQDHH ENESDNMDED DHDDDEEEDE DEENAYEIVA NRQQSSMAGA NTTTTTATTT  660
V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278285QRRHKKKR
2278286QRRHKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073652.10.0trihelix transcription factor GT-2-like
TrEMBLA0A1S3XDN40.0A0A1S3XDN4_TOBAC; trihelix transcription factor GTL1-like
STRINGSolyc04g071360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-60Trihelix family protein