PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02064.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 260aa    MW: 27088.4 Da    PI: 9.1575
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02064.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.42.1e-3731113386
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s ++s s  s
  Sme2.5_02064.1_g00003.1  31 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--S 113
                              799*****************************************************************87753334333333..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.6753690IPR017887Transcription factor TCP subgroup
PfamPF036349.6E-3536125IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MATSVEPNGG VLLDSSGSGG VATNSNVALK VKKPPAKDRH SKVDGRGRRI RMPIVCAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTIPASF STVSVSLRNS ISSVSVSAPV  120
DHKSLSVPSP SLLHPLISPA PFLLGKRLRS EEDDGGSGDK DVGPTAGFWA VPARSDYGQV  180
WSFAAPPPEM VVPTHSAAAA AGVLNSQASR FIQQQMEEAS AGRVGNYFPI AQGHLNLLAS  240
LSGSGTEPPP SSGRRDDDGH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2394350.0AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBankGQ4963330.0GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233810.11e-147TCP transcription factor 15
SwissprotQ9FMX21e-80TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV51e-146G3BGV5_SOLLC; TCP transcription factor 15
STRINGSolyc01g008230.2.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-65TCP family protein