PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02078.1_g00011.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 737aa MW: 83806.9 Da PI: 7.0519

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02078.1_g00011.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.4	3.2e-30	52	141	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA++vGF +r+s+ ++s+r++ i +r++vCskeg++ + +++++k +r+r ++r+gCka+++vkk++ gkw +tk+ ++HnH Sme2.5_02078.1_g00011.1 52 FYNSYARRVGFGTRVSAYRRSRRDNAISTRQLVCSKEGFNPRPDNAQRKPKRQRIVSRVGCKAHMTVKKQTFGKWAITKFIKDHNH 137 9*******************************************99********************************** PP FAR1 88 elap 91 el+p Sme2.5_02078.1_g00011.1 138 ELVP 141 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-27	52	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-27	236	326	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MEPEPFNLED DAMEFDRKED GQSASGLDLG QQSDLEPYEG MEFESEQAAR IFYNSYARRV 60 GFGTRVSAYR RSRRDNAIST RQLVCSKEGF NPRPDNAQRK PKRQRIVSRV GCKAHMTVKK 120 QTFGKWAITK FIKDHNHELV PPDQIHLIRS HRHVSGPARS LIDTLQAAGL GATGVMSVLI 180 KQRTLGTGAQ YIFDYLKQKQ AEDPDFFYAI QGGSSGNIFW ADSTSRMNYS YFGDTVIFDT 240 TYRTHRYRVP FAPFIGVNHH CQPVLFGCAL LLNESESSFI WLFQNWLAAM SGRHPVSITS 300 DHDRIIRSAI VDVFPGTRHR FCKSNIFREA QERLSQSLQS FPTFEAEFQK CVNLTETIEE 360 FELCWGSLLG RYNLIDDEWL QSIYDARQHW VPVYLRDAFF GETSIAKTSD STNSFFDGYI 420 DASTNIHILM SQYEKAIASR HEKEVKADYD TINIVPILKT PSPMEKQAAN IYTREIFLMF 480 QQELIETLAY PATVINDTGH ILAVFRVKNV LRLLSHYVLK RWTRKAKSEV VLDEDKLGLP 540 SSHNDSYTDR FEKLSLEATK YVKEGVDSEN VYLVAMDALC EASKKVAAAI RGTSALPPSL 600 DMNKGMELTL NGNQADCDDS SLRGTFVCVH PTLPRPHLWD FTGSNRIARQ EMEATKNGDK 660 SASAMEAFEK LEKVGEGTYG KSQDEKIQEL TIAVVNATEI CKAYRAKLLS ILREMEEQKL 720 RISLKEGLSC KSFRLYG

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MEPEPFNLED DAMEFDRKED GQSASGLDLG QQSDLEPYEG MEFESEQAAR IFYNSYARRV  60
GFGTRVSAYR RSRRDNAIST RQLVCSKEGF NPRPDNAQRK PKRQRIVSRV GCKAHMTVKK  120
QTFGKWAITK FIKDHNHELV PPDQIHLIRS HRHVSGPARS LIDTLQAAGL GATGVMSVLI  180
KQRTLGTGAQ YIFDYLKQKQ AEDPDFFYAI QGGSSGNIFW ADSTSRMNYS YFGDTVIFDT  240
TYRTHRYRVP FAPFIGVNHH CQPVLFGCAL LLNESESSFI WLFQNWLAAM SGRHPVSITS  300
DHDRIIRSAI VDVFPGTRHR FCKSNIFREA QERLSQSLQS FPTFEAEFQK CVNLTETIEE  360
FELCWGSLLG RYNLIDDEWL QSIYDARQHW VPVYLRDAFF GETSIAKTSD STNSFFDGYI  420
DASTNIHILM SQYEKAIASR HEKEVKADYD TINIVPILKT PSPMEKQAAN IYTREIFLMF  480
QQELIETLAY PATVINDTGH ILAVFRVKNV LRLLSHYVLK RWTRKAKSEV VLDEDKLGLP  540
SSHNDSYTDR FEKLSLEATK YVKEGVDSEN VYLVAMDALC EASKKVAAAI RGTSALPPSL  600
DMNKGMELTL NGNQADCDDS SLRGTFVCVH PTLPRPHLWD FTGSNRIARQ EMEATKNGDK  660
SASAMEAFEK LEKVGEGTYG KSQDEKIQEL TIAVVNATEI CKAYRAKLLS ILREMEEQKL  720
RISLKEGLSC KSFRLYG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	104	KPKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073245.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q7GBB0	0.0	A0A3Q7GBB0_SOLLC; Uncharacterized protein
STRING	XP_009798613.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]