PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02082.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family S1Fa-like
Protein Properties Length: 84aa    MW: 9695.76 Da    PI: 11.0518
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02082.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA113.68.9e-36463564
                     S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqG 64
                              ve+ G+nPGlivll +ggl+l+fl+gny+ly+yaqk+lPP+kkkP+skkk+k+e+lkq 
  Sme2.5_02082.1_g00003.1  4 DVEVSGFNPGLIVLLFIGGLVLTFLIGNYALYMYAQKTLPPKKKKPISKKKMKKERLKQD 63
                             689*******************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046896.1E-34562IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MAKDVEVSGF NPGLIVLLFI GGLVLTFLIG NYALYMYAQK TLPPKKKKPI SKKKMKKERL  60
KQDRTSKAAA FIVLYRLRNF LRNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.26e-20DNA-binding protein S1FA
RefseqXP_024026346.16e-20DNA-binding protein S1FA
TrEMBLM1BVN63e-22M1BVN6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000539525e-23(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249