PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02102.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 216aa    MW: 22510.9 Da    PI: 8.6491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02102.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00024163123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ykC+ C+k F++   L  H  +H
  Sme2.5_02102.1_g00005.1 41 YKCSVCNKAFTSYQALGGHKASH 63
                             9***********99999998887 PP
2zf-C2H214.30.00012107129123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C k F++   L  H r+H
  Sme2.5_02102.1_g00005.1 107 HVCSICQKAFPTGQALGGHKRRH 129
                              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-43764IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-94063No hitNo description
SMARTSM003550.00664163IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-134165IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3464163IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-9102129No hitNo description
SMARTSM003550.056107129IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-11107131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLARDNGTGT GSTDVAVRQE PEKKTAELKP VLIEEKTEQS YKCSVCNKAF TSYQALGGHK  60
ASHRKITATA TAAVSDDNNP STSTSTSGGG GGGGGNISAM NPSGRSHVCS ICQKAFPTGQ  120
ALGGHKRRHY EGKLGGHHRD TGGGGVHSGS VVTTSDGGGG GASTHVARDF DLNMPASPEL  180
QLDLRIDFGG RSQRPIEQEV ESPMPSKKPR LFFSMD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477119.17e-96PREDICTED: zinc finger protein ZAT10-like
RefseqXP_016539435.16e-96PREDICTED: zinc finger protein ZAT6-like
TrEMBLA0A2L1CF151e-157A0A2L1CF15_SOLME; Zinc-finger protein
STRINGPGSC0003DMT4000847511e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-31salt tolerance zinc finger