PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02102.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 152aa MW: 16555.9 Da PI: 8.3936

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02102.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.9	2.1e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C++lr++C+++C+l++ + +++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg+++ Sme2.5_02102.1_g00007.1 2 SCNGCRILRKGCNENCILRQSLqgiesAHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVHGAVGLLW 87 6*******************9999888999************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++++q+++e++l Sme2.5_02102.1_g00007.1 88 TGNWHVCQSAVETVLK 103 ********998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.881	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESAH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFTALTASP 120 EFESEANDVD LFRSQSSRLD RKAQTSDLRG KL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	9e-82	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230706.1	2e-94	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-64	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A3Q7FCC8	5e-93	A0A3Q7FCC8_SOLLC; Uncharacterized protein
STRING	Solyc01g107190.2.1	9e-94	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-67	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]