PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02128.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 279aa    MW: 30767.6 Da    PI: 6.1157
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02128.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.16.9e-12173205436
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                              +kr rr ++NRe+ArrsR+RK+a ++ Le+ v 
  Sme2.5_02128.1_g00003.1 173 VKRMRRQASNRESARRSRRRKQAHLADLENQVR 205
                              79***************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-4169229IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.036172204IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.37E-8173209No hitNo description
PfamPF001702.8E-9173205IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.5E-8174209No hitNo description
PROSITE patternPS000360177192IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKRSPSLLAL EEFINHNKFY GEDAKIGDVF GGIDHHHHQN INNNSTNNNN NDSNHGDDHN  60
NNNSHHAQLF GDICSIAPSF TMRNQEILNG FSNCALTEKP LWSPNITPKQ SSISVTVDSQ  120
SSICGGSPTP TIIMPKVRDN QTMGATSGSY QSDDDDVDGE VGPCEESTDP LDVKRMRRQA  180
SNRESARRSR RRKQAHLADL ENQVRLAEDM VARGSLTSSL SHLLQNYLNI PPSLGTNNNN  240
NNNNNNSTMC RFDNVSPTIT VPGEDSWGAI SGQNPMIIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186193RRSRRRKQ
2188193SRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0093571e-39AP009357.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0025I17, complete sequence.
GenBankHG9754471e-39HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-39HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357031.21e-110PREDICTED: basic leucine zipper 9
TrEMBLM1B6Y91e-109M1B6Y9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000384931e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.17e-13basic leucine zipper 9