PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02145.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 613aa    MW: 68369 Da    PI: 8.707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02145.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.23e-2569150286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              W ++e+++Li +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k+++ ++    s +++y++++e
  Sme2.5_02145.1_g00004.1  69 WVQEETRVLIGLRREIDSLFNTSKSNKHLWDQISMKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNQDRN---GSAKMSYYKEIE 150
                              *****************************************************************99984...566899***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-461130IPR009057Homeodomain-like
PROSITE profilePS500908.5661125IPR017877Myb-like domain
SMARTSM007170.002465127IPR001005SANT/Myb domain
CDDcd122032.07E-2867132No hitNo description
PfamPF138378.1E-2068152No hitNo description
PfamPF077274.9E-13375429IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566722.62E-13381407No hitNo description
SuperFamilySSF566722.62E-13437612No hitNo description
CDDcd092727.72E-51512613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MYMSDKPQAI DFYKEEEEDP RSHKMIVDVV PPITQQQILI GDTNSSGGEE NCTNPSSDLK  60
TPKKRAETWV QEETRVLIGL RREIDSLFNT SKSNKHLWDQ ISMKMREKGF DRSPTMCTDK  120
WRNLLKEFKK AKQNQDRNGS AKMSYYKEIE EILRERTNSG GGYKSPPPPK VDSFMHFAEK  180
GLDDTGITFG PVEGWTIKSI SGQGGSPMTS LSRDQKWRHA SVPQSTVPIA GNSFAYVSKS  240
TTLGSWVMDS GDSDHISVHS DIWGPSRVLP VSTFEESPIV VPPLPQPNNP PPLLTYHHCP  300
RPAPVLDDSC HAPDAAPTAN LPAPSQPGAL KKVKVGPDGQ IDRLKARLVA KGYTQIFGVD  360
FTDTFAPVAK MASVQHFQTK DLGRLKYFLG IEIAQSGSGI VISQRKYVLD ILEETGMMGC  420
RPIDTPMDSN VKLLPGQGEP LSNPKRYRRL VRKLNYLTMT RPGISFPVSV VSQFMTFPCD  480
SHWDAVVRIL RYIKSAPGKG LLFEDRGHEH ITGYTDADWV GSPSDRWSTS GYCVLVGGNV  540
VSWKSKKQSV VAQSSAEAEY QVMATATCEL IWVKQLLREL KFGKVDQMEL VCVNQAVLRI  600
ASNPVFHERT KHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4263148186DNA binding protein GT-1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494880.0AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438KPT21e-154A0A438KPT2_VITVI; Retrovirus-related Pol polyprotein from transposon RE1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.34e-65Trihelix family protein