PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02180.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 61aa MW: 6950.1 Da PI: 10.9212

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02180.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.4	3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++ Sme2.5_02180.1_g00001.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSNKGKLFEYAN 59 79***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.0E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.113	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.98E-36	2	61	No hit	No description
SuperFamily	SSF55455	2.09E-29	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFSN KGKLFEYAND 60 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	5e-21	1	59	1	59	MEF2C
5f28_B	5e-21	1	59	1	59	MEF2C
5f28_C	5e-21	1	59	1	59	MEF2C
5f28_D	5e-21	1	59	1	59	MEF2C
6byy_A	6e-21	1	59	1	59	MEF2 CHIMERA
6byy_B	6e-21	1	59	1	59	MEF2 CHIMERA
6byy_C	6e-21	1	59	1	59	MEF2 CHIMERA
6byy_D	6e-21	1	59	1	59	MEF2 CHIMERA
6bz1_A	6e-21	1	59	1	59	MEF2 CHIMERA
6bz1_B	6e-21	1	59	1	59	MEF2 CHIMERA
6bz1_C	6e-21	1	59	1	59	MEF2 CHIMERA
6bz1_D	6e-21	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	STU23757	3e-73	U23757.1 Solanum tuberosum transcription factor (POTM1-1) mRNA, complete cds.
GenBank	STU23758	3e-73	U23758.1 Solanum tuberosum transcription factor (POTM1-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234173.2	9e-36	agamous-like MADS-box protein AGL8 homolog
Refseq	XP_016555896.1	1e-35	PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X1
Refseq	XP_019069686.1	9e-36	agamous-like MADS-box protein AGL8 homolog isoform X1
Refseq	XP_025887092.1	9e-36	agamous-like MADS-box protein AGL8 homolog isoform X1
Refseq	XP_027773499.1	4e-36	agamous-like MADS-box protein AGL8 homolog isoform X2
Refseq	XP_027773500.1	4e-36	agamous-like MADS-box protein AGL8 homolog isoform X3
Swissprot	Q40170	8e-37	AGL8_SOLLC; Agamous-like MADS-box protein AGL8 homolog
Swissprot	Q42429	1e-36	AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A0V0H919	2e-35	A0A0V0H919_SOLCH; Putative agamous-like MADS-box protein AGL8-like
TrEMBL	A0A2G2WLS2	2e-34	A0A2G2WLS2_CAPBA; Agamous-like MADS-box protein AGL8-like protein
TrEMBL	A0A2G3C9F7	2e-34	A0A2G3C9F7_CAPCH; Agamous-like MADS-box protein AGL8-like protein
TrEMBL	M0ZY31	2e-34	M0ZY31_SOLTU; Uncharacterized protein
STRING	Solyc06g069430.2.1	3e-35	(Solanum lycopersicum)
STRING	PGSC0003DMT400010451	5e-35	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-36	AGAMOUS-like 8

Publications ? help Back to Top
Kang SG,Hannapel DJ Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]