PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02214.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 685aa    MW: 75459.7 Da    PI: 9.5636
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02214.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07586635147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sme2.5_02214.1_g00006.1 586 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 635
                              678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.596581640IPR017930Myb domain
SMARTSM007171.2E-7585638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10586636IPR009057Homeodomain-like
CDDcd116606.38E-17587637No hitNo description
SuperFamilySSF466891.26E-15587668IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDHMDMKRLD YGFNGYQVPP IPRATRSARR RGIIRRKTDG NGTSPFDLLA TVAGKLLGEG  60
ESSPYSTGSV RGKEQGAIAK DEKVKDEEDR SLKEKSYTEG CYERGFFISE LVSQAPVVNR  120
SLSELPHVQN DMISGPVSVS MSSDCSEKLL FAKQKFVNGE SGEEHGNFSF KTEREASGCG  180
VFSSCTLDTE NDKQMKIVLS NNVKVSTDKG AAISSSKFPD VGDKKPSTLV TSDESVKLSL  240
STYPAPCRSF PVIRNDVKLA YNDDDENSGC TQPSTPNKVS GSTPRARDQP IKKLLASKYW  300
EQNLKSDDEG HANSGGKTMH VYYNRNIGYK HQRSQRDFPF KKRKLFKYGS FTNSDAEMST  360
DGISSSPTND LHGNASGSSK ASSGGCTAAG TSVFNGGRAF LRPGDSHVEF RIKSFKIPEL  420
SRTVTEAVTA ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS RDYKLDALGF SLEPNPIQTS  480
QPLGQDCRSC VLPYETPQPL TRCPSPATVV HTGIQQGRSD DHTGTSLSNF LESDHESAPS  540
PHYAALEKMS ANSRALVPLT AVNAEALSVV PLRKPKRSEA TQRRIRRPFS VSEVEALVQA  600
VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL  660
TAHAYWSQQQ AKQQMKQPSE TYLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-555736764107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334343QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350780.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
TrEMBLM1CZ520.0M1CZ52_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-121TRF-like 2