PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02226.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 110aa MW: 12626.2 Da PI: 9.6586

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02226.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	36.4	1.1e-11	81	103	1	23
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK vk+++fp s Sme2.5_02226.1_g00005.1 81 LDDGYRWRKYGQKAVKNNKFPSS 103 59*******************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-13	66	103	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-10	73	103	IPR003657	WRKY domain
PROSITE profile	PS50811	12.323	76	103	IPR003657	WRKY domain
SMART	SM00774	0.0016	81	106	IPR003657	WRKY domain
Pfam	PF03106	6.8E-8	82	103	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MENYQAIFPS STSSTSHHDE YFSLMNSKSS EDAQGKNKGF LGLMASMETR SGINEDEEKS 60 CKKKMKKPRF AFQTRSQVDI LDDGYRWRKY GQKAVKNNKF PSSCPTTVMY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB061245	3e-53	AB061245.1 Solanum tuberosum StWRKY mRNA for WRKY-type DNA binding protein, complete cds.
GenBank	AJ278507	3e-53	AJ278507.1 Solanum tuberosum mRNA for WRKY DNA binding protein (WRKY1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275604.1	3e-39	probable WRKY transcription factor 75-like
TrEMBL	Q8H9D7	8e-38	Q8H9D7_SOLTU; WRKY-type DNA binding protein
STRING	PGSC0003DMT400056352	1e-38	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	3e-20	WRKY DNA-binding protein 75