PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02276.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 675aa    MW: 75360.9 Da    PI: 7.4993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02276.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-067697223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             kC++C++ F ++ n++rH+r+H
  Sme2.5_02276.1_g00005.1 76 KCEKCSREFYSPINYRRHMRLH 97
                             7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6197597IPR007087Zinc finger, C2H2
SMARTSM003550.00557597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MPVAKLSIGA TPAAMKADEG NDSFDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLQGLEPQ  60
DNSGGWPMLT PPKYQKCEKC SREFYSPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSVDEIKKVA SLHDVSIKDV EPPPVPAAVW TLPQDYYKAG LALLDLIQAI PSKLTSQELF  180
SILDDASERT FLCAGTAESV QKYVFDGDTF RKGPELKNLV ACTSFLFEQK LVKAWFADKD  240
AEALRCQKLL FEEEEAAQKK QTELLERKKL KKLRQKEQRE REQSNWGRRD LEVPTAESSI  300
LSVAVSDSNS STPKISDDTS SGLELAQFSN NEVMDIEVQL NHSDQHLDLV EIQDVEPPPV  360
PAHSRWPFSP TQWQVPKSQR MGRNGSHNNQ NHQVQKLEPV QKHGVFKDRG APVNSSKIWT  420
KKNRVLNGQR PRLEPQEEAI DQNQSNCEVM IGSISVPMKN CCTPGPGNCP AVERDSFDST  480
EPAMPKKCDH VVKPAKQDAL QGGSNVVAVK LWRPVNRHGS GQHPEEAVIT GKLDNQTSSA  540
ENCLRSCSMD DPIGKSKNYT CQVSDGDAHQ GLGFCSISAK TFLSERWKEA ISGDHVTLVL  600
ANDTVVSRQP DEQNGSPEAA PTSDDQGHGT LVKADNHQQT NTGVANLSSC GNSKLKFRQK  660
PDKSLKIRYI PKQKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265272ERKKLKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353878.10.0PREDICTED: uncharacterized protein LOC102605991
TrEMBLM1BAI60.0M1BAI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000408430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.18e-99C2H2-like zinc finger protein