PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02342.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 245aa    MW: 28156.8 Da    PI: 9.5242
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02342.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.88.8e-161150342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             ien+  r+v++ kR +g+l K +EL +LCd+e+avii+s+
  Sme2.5_02342.1_g00010.1 11 IENENERKVSYNKREKGLLTKLKELGILCDVEIAVIIYSP 50
                             9*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.348149IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-10323IPR002100Transcription factor, MADS-box
CDDcd001204.09E-19359No hitNo description
PfamPF003198.4E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPRKKVKFSL IENENERKVS YNKREKGLLT KLKELGILCD VEIAVIIYSP YKIEPKVFPN  60
HGSIVNTLTK FKELPTDDKS KKMVTRDEFT KKRIEKMKEK LIKAREENRV KEITNEMYEV  120
LKGKDIPIDM HPYDVNNLSY VIKKNLKQIH ESMKKKIGEE GYISNFPQSI IGPIIPSGTN  180
IEGPNDPLLS HTSLEVSMVP PLSPSMFFSG INYERDNDSF FVPNLATTIV ALPTIPLSTL  240
HEFFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341870.12e-87PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1D9365e-94M1D936_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000852568e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-26AGAMOUS-like 80