PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02389.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 253aa    MW: 28668.4 Da    PI: 8.9953
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02389.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003395117223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +C+ C+++++++ +L  H +  H
  Sme2.5_02389.1_g00009.1  95 SCSVCSRVYPTSRLLSIHVSEaH 117
                              6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.416792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003555.494117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.38132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAMEFETQNQ LGFPFWSPIR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EEEQLVQNIT  60
DEEISNLFCP IIGCGARMKS LDDFEDHYVT RHTASCSVCS RVYPTSRLLS IHVSEAHDSF  120
FQAKAARGYP MYECLVEGCG VKLKSYKSRQ QHLVDKHKFP ASYEFFRKAR PSKKQRQKLQ  180
HKQALNKTQE TSSAMQVEEE TIDNLVSAVS KLTTSDSPSA ISFGRSRARG LSFVPRAVNR  240
QRGPVTSTGG TKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-151HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338700.11e-179PREDICTED: zinc finger protein 511
TrEMBLM1BSR11e-178M1BSR1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000520621e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-114zinc ion binding;nucleic acid binding;zinc ion binding