PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02398.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 776aa MW: 89249.9 Da PI: 8.2242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02398.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.4	7.5e-21	59	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v++ ++gkw+++++++eHn Sme2.5_02398.1_g00009.1 59 EFYNVYATKVGFRIRIGQLYRSRIDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVQRLDSGKWVLANIKKEHN 130 6*************************************976..............589********************** PP FAR1 87 Hela 90 Hel Sme2.5_02398.1_g00009.1 131 HELE 134 96 PP
2	FAR1	65.9	1.1e-20	211	286	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY+++A ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v+++++eHn Sme2.5_02398.1_g00009.1 211 EFYHTHAANTGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRFQNEHN 282 6************************************9998..............4899********************* PP FAR1 87 Hela 90 Hel Sme2.5_02398.1_g00009.1 283 HELG 286 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-17	59	134	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.7E-16	211	286	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-27	385	477	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.435	662	698	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-8	668	695	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	673	700	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MSREERDDTM TVKAKPAAGL GIATIVKNNG NYRDDEEEGE SRLEPNVGLE FDSAEDAQEF 60 YNVYATKVGF RIRIGQLYRS RIDGSVVSRR FVCSKEGFQT TSRTGCPAFI RVQRLDSGKW 120 VLANIKKEHN HELEHPGEIC PSRMQRKIVT PTPKSKSSFV VSTRTGLRSL DEDGPSGILD 180 FKRLKREKVN GETRGEPYKG LEFVSAGEAY EFYHTHAANT GFKVRIGQLF RSKNDGSITS 240 RRFVCSKEGH QHPSRVGCGA YMRIQRQESG RWVVDRFQNE HNHELGPPID ASERVSSKGF 300 KEELRNGLEN MDLVETNGGF SLVKRSRESK IGSDWYNELF DYFQSRQAED MGFFYAVEMH 360 KGRAMSILWA DSRSRFSCTQ FGDAIVFDTT YRRGNYSVPL ASFIGVNHHR QPVLLGCALI 420 AEESEESFTW VFQAWLRAMS GHRPVSIVAD LDRDIQQSIA QVFPGTHHRF SAWQVAAKEQ 480 ENMGALLSMN PEFKYEYETC ILQSQTANEF EAAWTVLINK YNLRENTWLK ETYRMRKSWV 540 PLYIKGTFFA GIPMDGGLKS YFGTILTSQA ALSEFLIRYE KALEHCREEE RKEDFNSFNL 600 QAVLQTKDPI EDQCRRLYTI TMFKVFQKEL LECYSYVGIK INVEGAISRY LVQKCGNGDE 660 RNTVAFNASN LNISCSCKMF EFEGVLCRHA LKVFQIMNIR ELPSRYILHR WTKDAKYGIL 720 RDVDSRGASQ DYKALMLWSL REEAKNYIEA GTASLERYKL AFEIMQEGRR NLCWQN

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MSREERDDTM TVKAKPAAGL GIATIVKNNG NYRDDEEEGE SRLEPNVGLE FDSAEDAQEF  60
YNVYATKVGF RIRIGQLYRS RIDGSVVSRR FVCSKEGFQT TSRTGCPAFI RVQRLDSGKW  120
VLANIKKEHN HELEHPGEIC PSRMQRKIVT PTPKSKSSFV VSTRTGLRSL DEDGPSGILD  180
FKRLKREKVN GETRGEPYKG LEFVSAGEAY EFYHTHAANT GFKVRIGQLF RSKNDGSITS  240
RRFVCSKEGH QHPSRVGCGA YMRIQRQESG RWVVDRFQNE HNHELGPPID ASERVSSKGF  300
KEELRNGLEN MDLVETNGGF SLVKRSRESK IGSDWYNELF DYFQSRQAED MGFFYAVEMH  360
KGRAMSILWA DSRSRFSCTQ FGDAIVFDTT YRRGNYSVPL ASFIGVNHHR QPVLLGCALI  420
AEESEESFTW VFQAWLRAMS GHRPVSIVAD LDRDIQQSIA QVFPGTHHRF SAWQVAAKEQ  480
ENMGALLSMN PEFKYEYETC ILQSQTANEF EAAWTVLINK YNLRENTWLK ETYRMRKSWV  540
PLYIKGTFFA GIPMDGGLKS YFGTILTSQA ALSEFLIRYE KALEHCREEE RKEDFNSFNL  600
QAVLQTKDPI EDQCRRLYTI TMFKVFQKEL LECYSYVGIK INVEGAISRY LVQKCGNGDE  660
RNTVAFNASN LNISCSCKMF EFEGVLCRHA LKVFQIMNIR ELPSRYILHR WTKDAKYGIL  720
RDVDSRGASQ DYKALMLWSL REEAKNYIEA GTASLERYKL AFEIMQEGRR NLCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249494.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_010312262.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_019071660.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A3Q7JGE1	0.0	A0A3Q7JGE1_SOLLC; Uncharacterized protein
STRING	Solyc10g084220.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]