PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02430.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 392aa    MW: 43996.2 Da    PI: 7.6704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02430.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3107.18.6e-3475185199
                              EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                              f+k ltpsdv+k++rlv+pk++ae++            + ++e++  l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L
  Sme2.5_02430.1_g00005.1  75 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgsnnnsnnEANTEKGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRL 160
                              99*******************************9999988888999**************************************** PP

                              -TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                              ++gD+v+F +++++  +l+++++r+
  Sme2.5_02430.1_g00005.1 161 DAGDIVLFDRHRSDADRLFIGWRRR 185
                              *********98889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-4268190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-3071184IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-2873174No hitNo description
PfamPF023628.8E-3175186IPR003340B3 DNA binding domain
SMARTSM010193.8E-2875186IPR003340B3 DNA binding domain
PROSITE profilePS5086314.69275186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSINHISSET LWWTKQQQQP SSPNSAFWPE TTTNSNMFAF NLNSNMSSST INEDDEEQIG  60
QAEDNLEEIP REHLFEKPLT PSDVGKLNRL VIPKQHAEKY FPLSGSNNNS NNEANTEKGL  120
LLSFEDESGK SWRFRYSYWN SSQSYVLTKG WSRFVKEKRL DAGDIVLFDR HRSDADRLFI  180
GWRRRNTASV AAVALQDSST AAVAPPPYIG GGGGWAQVYY GGHTYPGAGI PYQPDCLHAG  240
RGAVRNQTTA SVNNNTRRHV RLFGVNLECE ANESSWSEPP STPNGGGFST SSHHHDQGQG  300
QGQASQRYYQ YQFQYSKPHA AIPAATSSYN NNYHHNHTGC NADCSVYCLR STSCSHSYAR  360
RDVRGSELKL EIDSIGVKQF VYSLKRLEKK FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-51711854113B3 domain-containing transcription factor NGA1
5os9_B4e-51711854113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776788.11e-159PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8RYD36e-66Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A1U7WDQ71e-157A0A1U7WDQ7_NICSY; B3 domain-containing protein At2g36080-like
STRINGXP_009776788.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]