PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02438.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 447aa    MW: 49090.6 Da    PI: 9.0513
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02438.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.12.3e-31170226158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQy++Il+RR++Rak+e ekkl +k rkpylheSRh+hAl+R+R+sgGrF
  Sme2.5_02438.1_g00007.1 170 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKVRKPYLHESRHQHALKRARASGGRF 226
                              69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-34168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.439169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-26171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-23172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.3E-23203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MQSNSKSANC EEARTYNVLN PSVNSETWWN TADNNPVSLG LMGESASDSP SPEQAVDGRS  60
QSDGGANEEN DAAPEKSQST IPVHSELAGS YAQVGQNLQP TAPTLPPKGD GSLTQTPQLE  120
LVSHSMACAP NLYVDPYYGG MLTPFGQPMV PPHVLDMHHP RMPLPHEIAQ EPVYVNAKQY  180
HGILRRRESR AKAELEKKLI KVRKPYLHES RHQHALKRAR ASGGRFAKKS DAGTSKVADS  240
GSAVSLQSVH SSGSEQLLSS TADIPEWHKD RSLAEHQHSY SNGQGYGKQS SFQEPKYQAQ  300
SAQLHVSVLA GPMPGGNSSL AFVAMVLKRR VLRIVGSVLP FCTVNRTRTR VEKEEFMVVS  360
FWAVNAIIVE SGVFVQVGLN IIVNYQVCCV KLKRVNSTYV TTLRMGFEMR VPRKQPLYLG  420
SGKVCVHSIL LRPHLWDFTG YVVVVDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19170244276NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-101HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366543.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLM1AQ620.0M1AQ62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000277850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-52nuclear factor Y, subunit A1