PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02456.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 432aa    MW: 47905 Da    PI: 6.3562
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02456.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.53.3e-08231263338
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                              y+GV++++++grW A+I  +     +k  +lg+f +
  Sme2.5_02456.1_g00003.1 231 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFEF 263
                              9***************988532...5********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-10229313IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-5230262IPR001471AP2/ERF domain
SMARTSM003805.7E-20230318IPR001471AP2/ERF domain
PROSITE profilePS5103214.052230312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-6287312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MLNSSHQSSS MLQSNTPSAV PHESHQYFFA DNFFPHGWNV PKTHELMYHQ GLCVDSQIIQ  60
HHHQPPPKLE DFFGGETEAQ DSSSLTHIYD HHGGAAGDGG YFNDGRQDLN NNYQVAVGGF  120
PTLPANSGSE VDDSPVMGSE FATESSYPPI ITLGVATNSE KAIVTGGIDG QEDMKHIYGI  180
TVVKERAKQE KGVKASDYTK EIEEMKHMTK QEFIASLRRK SSGFSRGASM YRGVTRHHQQ  240
GRWQARIGRV AGNKDLYLGT FEFSDNPTTT IYLVKFYKWS MGRIESTEEE AAEAYDIAAI  300
KFRGLNAVTN FEMNRYDVEA IMKSSLPIGG AAKRLKISLE SEQKPSLNDT YQQAPHNNVN  360
NNNNSINFGG ISPVSAIPCG LPFDANQPYY HHSFFPHLQY SSNDSGASGH TASTMPLLPS  420
PAEIFIWPHQ SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-151HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240254.11e-174AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-68AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3Q7GIR41e-172A0A3Q7GIR4_SOLLC; Uncharacterized protein
STRINGSolyc05g051380.2.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.17e-68AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]