PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02465.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 246aa    MW: 28090.7 Da    PI: 6.8625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02465.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.62.9e-37141361128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++i ++ePwdLp  +   e++ yfFs+++ ky+    +n a   gyWk +
  Sme2.5_02465.1_g00006.1  14 LPPGFRFQPTDEEIVFQYLIRKTFSCPLPA-SIIPEINISNHEPWDLPGDI---EQDRYFFSNKEAKYSG---ANMASIGGYWKPS 92 
                              79****************************.89***************554...5689*********973...5666669****** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                              g dk+++++ ++  +g+k+tLvfyk+ ++ ++++tdW+mheyrl
  Sme2.5_02465.1_g00006.1  93 GLDKQIICSkRKPIIGMKRTLVFYKEkNTCHAHRTDWIMHEYRL 136
                              *****9997455569*********763667889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-4211172IPR003441NAC domain
PROSITE profilePS5100544.15514172IPR003441NAC domain
PfamPF023651.4E-2215136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEKFNFVKDG AIKLPPGFRF QPTDEEIVFQ YLIRKTFSCP LPASIIPEIN ISNHEPWDLP  60
GDIEQDRYFF SNKEAKYSGA NMASIGGYWK PSGLDKQIIC SKRKPIIGMK RTLVFYKEKN  120
TCHAHRTDWI MHEYRLVLPK TSSSNSHAHF KKSSQSSLVQ IGNWVLCHVF LKKRNGKCDE  180
ANYDDDNYMA NDEDNVFQIE KPIVYYDFMS DRDAASSCSS SLSINDDANE VSSSPTSLPQ  240
PTNPPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-30917310169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755158e-71HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366907.11e-137PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-58NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM0ZZ061e-136M0ZZ06_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000110691e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-60NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]