PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02490.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 392aa MW: 43730.9 Da PI: 7.9327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02490.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52	1.2e-16	189	236	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ahn+ ErrRRd+iN ++ L++l+P+a K +Ka++Le++++Y+k+Lq Sme2.5_02490.1_g00003.1 189 AAHNQSERRRRDKINGKMKALQKLVPNA-----SKTDKASMLEEVIKYLKQLQ 236 79***********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.8E-18	183	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-18	183	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.77E-17	183	240	No hit	No description
PROSITE profile	PS50888	18.101	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-14	189	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-16	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MSYHTWNFSH QTQEEEENKY PRGHVHNQHN QNQVDPMSNK CEVAELTWEN GQVSMHSLGS 60 NLSNEQTKHT WGKAGDTLES IVHQATFQKQ NHDGQNQADI NREKNASYGG QQTRGVPKRM 120 RSSDSDPQLY GGRRSVEFIS ARASAQDNDI PMVTWPCNED STCHGGSEDK EEEHETKSSN 180 LSKRSRRAAA HNQSERRRRD KINGKMKALQ KLVPNASKTD KASMLEEVIK YLKQLQAQIH 240 LISNARNMEQ QMMMTTLGMQ PHIQMPLLAR MGMCSTAGML NNMTQAPYQS LIGGAPVIYP 300 TSSIPTLCPP FMSPPPFAMA STIPTPPQTA NGNATSPTVT KSAAAPNPSF PLTHPCIAFL 360 PQSTKMEFNN EMAAQYLQQA NQENINIQGQ KE

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MSYHTWNFSH QTQEEEENKY PRGHVHNQHN QNQVDPMSNK CEVAELTWEN GQVSMHSLGS  60
NLSNEQTKHT WGKAGDTLES IVHQATFQKQ NHDGQNQADI NREKNASYGG QQTRGVPKRM  120
RSSDSDPQLY GGRRSVEFIS ARASAQDNDI PMVTWPCNED STCHGGSEDK EEEHETKSSN  180
LSKRSRRAAA HNQSERRRRD KINGKMKALQ KLVPNASKTD KASMLEEVIK YLKQLQAQIH  240
LISNARNMEQ QMMMTTLGMQ PHIQMPLLAR MGMCSTAGML NNMTQAPYQS LIGGAPVIYP  300
TSSIPTLCPP FMSPPPFAMA STIPTPPQTA NGNATSPTVT KSAAAPNPSF PLTHPCIAFL  360
PQSTKMEFNN EMAAQYLQQA NQENINIQGQ KE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	198	RAAAHNQSERRRR
2	194	199	ERRRRD
3	195	200	RRRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-92	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015077955.1	0.0	transcription factor UNE10-like
Swissprot	Q8GZ38	2e-38	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A2G3C9H6	0.0	A0A2G3C9H6_CAPCH; Transcription factor PIF3
STRING	Solyc06g069600.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5437	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-40	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]