PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02518.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 184aa    MW: 20954.5 Da    PI: 5.2312
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02518.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB77.12.5e-24551331593
                    NF-YB  15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                                m +++P++  i++dak+++++cv ef  fv + a ++cq e+  ti+++d+ w ++++ f+dy+epl++yl++y e 
  Sme2.5_02518.1_g00010.1  55 MEMMRIFPSHVMITDDAKHIMKKCVFEFECFVICVAYEHCQYEQCTTITAEDVRWVMSNFDFDDYIEPLTLYLRRYHED 133
                              55889***********************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-1957144IPR009072Histone-fold
PfamPF008085.0E-957111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471137.81E-1858137IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNGGLGNGRF HSYCRCPQPT PAHSPSPGNG GFHSYCRCPQ PTLAHSPFLD IELSMEMMRI  60
FPSHVMITDD AKHIMKKCVF EFECFVICVA YEHCQYEQCT TITAEDVRWV MSNFDFDDYI  120
EPLTLYLRRY HEDDDGEHDS VRREHLLKYL MVDLASGSNI TSNGDASNGR TSQCADRDVE  180
SPAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-24571322297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356441.21e-47PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168329.11e-47PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168330.11e-47PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168331.11e-47PREDICTED: nuclear transcription factor Y subunit B-4-like
TrEMBLM1B1V03e-46M1B1V0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000351295e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-26nuclear factor Y, subunit B6