PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02557.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 757aa    MW: 86332.3 Da    PI: 6.6074
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02557.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.13.5e-1959152190
                     FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                              +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++++gC+  +++ k+      +w++t ++
  Sme2.5_02557.1_g00005.1  59 EFYCSFAKQCGFSIRRHRTRGKdGIGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSHCGCQTFMRIVKRAdlnVPEWRITGFS 144
                              6***************999877456677********************9*******************99888676789******* PP

                     FAR1  83 leHnHela 90 
                              + HnHel 
  Sme2.5_02557.1_g00005.1 145 NVHNHELL 152
                              ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1659152IPR004330FAR1 DNA binding domain
PfamPF105511.2E-22275365IPR018289MULE transposase domain
PROSITE profilePS5096610.225551587IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-8559585IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPEITDVAKE ISENGADSSQ DDIGAVEEMP EDTILSRQTS VNLIPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGIGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSHCG  120
CQTFMRIVKR ADLNVPEWRI TGFSNVHNHE LLKSTEMQLI PAYCTMSPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD QDNDPIDLLK MCKEMKDKDL  240
KFKYDYKIDC NNRLEYIAWS YASSLRLYEA FGDATVFDTT HRLNAYDMLL GIWIGVDNHG  300
SHCFFGCALL RDENVQSFSW ALKTFLGFMN GKAPGTILTD QNLWLKEAIA TEIPRVKHAF  360
CIWNITLRFT DWFSTLLGSQ YDDWKAEFHR LYSSHSVEEY EVGWNDMVKT YQLNGNKHIA  420
SLYALRSYWA LPFLRSFFFA GMTSTFQSET INTYIQRFLS AQSVLDNFVE QVARVVDAKD  480
QVGAKHKVQK NIQKVPLKTG SPIESHAATV LTSYAFSKLQ EELVFAPQYA SLMVNESYFI  540
VRHHKEMDGG YKVLWVPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPMRW  600
REFTSSLAKP TLFTLPSDHM GKVQLLQSMI STLINESIET EERLNVVCDE VSTVLSRIKG  660
FPTASNGGNT IAYESPSDSP ILAEVEDSEG IGQSFSCNPH ECINLVKLKE GGCRDGLDLY  720
AKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDKLGFL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359888.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_006359889.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G2ZVM30.0A0A2G2ZVM3_CAPAN; Protein FAR1-RELATED SEQUENCE 11
STRINGSolyc09g075640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]