PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02640.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 177aa MW: 20357.9 Da PI: 7.698

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02640.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.9	1.7e-26	11	64	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k+rl+Wt++LH+ F +av+qLGG+e+AtPk il++m+++gLt+ hvkSHLQ R Sme2.5_02640.1_g00006.1 11 KERLKWTKDLHDLFEKAVSQLGGPERATPKGILKVMGIPGLTIFHVKSHLQVQR 64 68*************************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.532	8	68	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-14	9	64	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-24	9	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-21	11	65	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-8	13	62	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-7	59	85	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDSNRSDSSS KERLKWTKDL HDLFEKAVSQ LGGPERATPK GILKVMGIPG LTIFHVKSHL 60 QVQRNLKMKL EAQGRFLDRI MEEQKAHASG SRPSCKSYSY SPLSLPSLCE ESESNIKELE 120 VDKLDRKRTR FEEDDAFLNH RYNNNNNVTY SPEELAWSTL ATYQSSPHLH ALYDYLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	10	69	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	4e-50	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019071061.2	5e-86	myb family transcription factor PHL7-like
TrEMBL	M1C477	4e-81	M1C477_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400059400	7e-82	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-22	G2-like family protein