PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02641.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 166aa    MW: 18954.8 Da    PI: 10.2079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02641.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000493658123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C+k+Fs+   L  H  +H
  Sme2.5_02641.1_g00005.1 36 FECKTCNKRFSSFQALGGHRTSH 58
                             89**********99998888777 PP
2zf-C2H212.90.0003279101123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++Cg+ F     L  H+r+H
  Sme2.5_02641.1_g00005.1  79 HKCSICGMEFDLGQALGGHMRRH 101
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.113658IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.12E-836101No hitNo description
PROSITE profilePS5015710.6163663IPR007087Zinc finger, C2H2
PfamPF139121.1E-113660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.00177104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.3E-978104IPR007087Zinc finger, C2H2
SMARTSM003550.07879101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.78579106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTAMKRSRED NGQVEAEAMA NCALMLLSRV HNNNDFECKT CNKRFSSFQA LGGHRTSHSK  60
RSRLLREFLV QTNKKNKAHK CSICGMEFDL GQALGGHMRR HRDEINKIST EKKTMMIPIL  120
KKSNSSKRIF GLDLNITPND DSDNNVDDFK LWPMEAAPSP VLRIFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363364.12e-89PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-33ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9D64e-88M1B9D6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401427e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-36C2H2 family protein