PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02705.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 383aa    MW: 41884.5 Da    PI: 5.6874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02705.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.7e-21176226256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Sme2.5_02705.1_g00003.1 176 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 226
                              59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-34175235No hitNo description
SuperFamilySSF541711.77E-23176234IPR016177DNA-binding domain
SMARTSM003805.8E-38176239IPR001471AP2/ERF domain
PROSITE profilePS5103223.235176233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32176234IPR001471AP2/ERF domain
PfamPF008472.0E-14177226IPR001471AP2/ERF domain
PRINTSPR003673.9E-11177188IPR001471AP2/ERF domain
PRINTSPR003673.9E-11199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAAAIDVYSS SSSNSINSSV FSDPLTEELM KALEPYMKGA SPSSFSSPSS TSPSSSSPST  60
PFYPFGEPNL YTDFCTIPST ATQMFSQGYS CYNHMGVAET GSIGLNHLTP SQILQIQAQI  120
QFQNQQLQLQ LQQQQSLGLL APTYTYPKNL NSTNYLGLKP VQMKQVGGAS QKTTKLYRGV  180
RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGEFARL NFPHLRHQLN  240
NELSDFKPLH SSVDAKLQAI CQSLANPKSD DLCSKSNSKT RKSKTAAAAA ASVDSGSAQD  300
CSSKSEITTD DSLKGEFSYT ENANVKIEAS SSSSPAPSEE SSSSPESDIT FLDFAEPSFD  360
ESENFFLPKY PSVEIDWAAL PNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22175233160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355363.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13
TrEMBLM1BUH60.0M1BUH6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000531520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-45related to AP2 4