PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02745.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 706aa    MW: 79288 Da    PI: 9.4439
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02745.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07580629147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Sme2.5_02745.1_g00002.1 580 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFefaDHRTYVDVKDKWKTL 629
                              6789999*******************9999889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.75E-8382468IPR029071Ubiquitin-related domain
PROSITE profilePS500539.308387457IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.904.8E-4390457No hitNo description
CDDcd017690.00569391457No hitNo description
PROSITE profilePS5129416.891575634IPR017930Myb domain
SMARTSM007172.4E-7579632IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-10580630IPR009057Homeodomain-like
SuperFamilySSF466894.11E-15581662IPR009057Homeodomain-like
CDDcd116602.13E-15581631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MLSKKRVRHG FSGYEFPVIP KAPRSVKRRH SHKNTDNDQI CPFELLAAVA GELLQESEGS  60
ACSNAAVGKD DLSDCREVIK CEQLKEDKAV KSECFDQGSC VESTYIPQPA VQGQDLKYSL  120
NKPNHIENNS FHKNTRTVLD SDHSGKDWSY TKLENCKEVN IDGKFHTKVE GGSSNLEDVY  180
DKRTETGTQQ QLDDDSKQTE DLTLANSCSV KGPTEKHVNN NSAINSDSSV QLPWHRAVPR  240
PSFGMKRNNV KLGIRDDDEN SFGSYRHSTN VRAFRQTSRI GYRRMRKMTS RRWQVVPQLK  300
DWERSCSKYG MKSIHRNRKR VCALERCRYE IPSKRRKLCH YSSVVAYDQK ANSKSISNSP  360
DKGIERDTIG AGASASVKNY RKNDHHVKFS IKSFKVPELF IEVPENETVG SLKRTVMEAV  420
KTILGSGLRV GMVIQGKKVR DDNKTLQQAG ISQNGNLDTL GFTLEPSSYP VSPSLHSKNL  480
PALSPYVADN ELTRRPHSPV MELELPSALS APSETRLDEH AEDYHESALS PSNPTHPPSD  540
VATPDSRALV IVSPVKADAH PVIPVNTKNR CSELSQRRTR RPFSVAEVEA LVEAVEQLGT  600
GRWRDVKIRA FEFADHRTYV DVKDKWKTLV HTASIAPQQR RGEPVPQELL DRVLIAHSYW  660
SKQHEKQQAE PPKMAKVQMQ NVGALENNNN NNNSSASMPS KMGSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-605646841121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317336RKRVCALERCRYEIPSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-157HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346713.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLM1A7D50.0M1A7D5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000162600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-104TRF-like 2