PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02745.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 971aa MW: 111622 Da PI: 6.8032

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02745.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.5	2.5e-07	7	27	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 ++ r+++NReAAr+sR+RKk Sme2.5_02745.1_g00006.1 7 QVLGRLAQNREAARKSRLRKK 27 56669***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00036	0	11	25	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-16	48	88	IPR025422	Transcription factor TGA like domain
SuperFamily	SSF52540	1.35E-28	306	459	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.3E-28	319	464	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	4.9E-9	324	463	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	6.0E-6	337	352	No hit	No description
SuperFamily	SSF52058	1.22E-20	608	931	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	2.7E-15	748	951	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	6.0E-6	893	909	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043531	Molecular Function	ADP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MSKPDMQVLG RLAQNREAAR KSRLRKKGLY VGGGLDASEL SYSGTASSAT AAKDDVLYIM 60 SGMWKTSAER FFMWIGGFRP SELLKVLTPH LEFLTEQQLR EVCNLTQSCQ QAEDALSQGM 120 VKLHQILAEA VAAGRLGEGN YSLPQMGPAI EKLEALVRFV NQQTNDFKIY GLTSYTAVIS 180 LLQTLQLFDI HTSQPFRSLY ATAQYFQHVL ENISGFDTEK IKSLEEKLRD AASEAEDVVE 240 LKISQIIRAS GWRFGTRKLQ HQDLLPVVQK MDKIKNQVME IVSHDAHDQV LELSRDSSIG 300 TTSASYPTLE DDIVRGLDDD LEIIVERLKG FPRDLDVVTI SGMGGIGKTT LARKAYHHQR 360 IRYHFDVLAW VTISQEFRFR NVLLELLHCI SKKTDTVNST DYDKMDESEL AEVVQKSLNY 420 DEIELADVVQ KSLKGRRYLV VVDDIWSTDV WDGIRGIFPD YKNGNHLKPC FLSMCSFPED 480 FQVDTRRLIQ LWIAEGFIRT SENGKSLEEV AEHYLEDLIS RNLIQARKRR FNGEIKECKI 540 HDLLHEFCLI EAEMTKHMHV QKTHPILPTQ KHNFRRFSFQ TESYSVDDCC KLLPHVARSI 600 HLFFLLDLPF KTHINLVDIL PIYRRDPVIH EFFCHFNLLR VLAIFNRCVQ FDSFSLVITK 660 LFHLRYLRIE FYGDIPESIS DLQNLQTLIC HGYCSLPGKI WTMKNLRFIH TKGPSYLPSP 720 RTEHPMTRMP NLEEFSILCY TSCTNEVFCV IPNLKRLIIH LPLVLDEPSP QIFDMSRLTK 780 LEALKLSGQM FDMSRLTKLE ALKLSGSVRT VEPIKRFVFP TSLRRLSIKW CCYFDWADIS 840 STVMMLPNLE ELKLKSCVAN DVVWRMSDKD KFESLKLFLL DDVELGCWEA SSDNFPNLKR 900 LIMKRCNQLQ EIPADFGEIC TSESIELHDC GTTAEESARK IEQEQVDLGN NTLKIYIHKV 960 IMNGASCTKK P

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MSKPDMQVLG RLAQNREAAR KSRLRKKGLY VGGGLDASEL SYSGTASSAT AAKDDVLYIM  60
SGMWKTSAER FFMWIGGFRP SELLKVLTPH LEFLTEQQLR EVCNLTQSCQ QAEDALSQGM  120
VKLHQILAEA VAAGRLGEGN YSLPQMGPAI EKLEALVRFV NQQTNDFKIY GLTSYTAVIS  180
LLQTLQLFDI HTSQPFRSLY ATAQYFQHVL ENISGFDTEK IKSLEEKLRD AASEAEDVVE  240
LKISQIIRAS GWRFGTRKLQ HQDLLPVVQK MDKIKNQVME IVSHDAHDQV LELSRDSSIG  300
TTSASYPTLE DDIVRGLDDD LEIIVERLKG FPRDLDVVTI SGMGGIGKTT LARKAYHHQR  360
IRYHFDVLAW VTISQEFRFR NVLLELLHCI SKKTDTVNST DYDKMDESEL AEVVQKSLNY  420
DEIELADVVQ KSLKGRRYLV VVDDIWSTDV WDGIRGIFPD YKNGNHLKPC FLSMCSFPED  480
FQVDTRRLIQ LWIAEGFIRT SENGKSLEEV AEHYLEDLIS RNLIQARKRR FNGEIKECKI  540
HDLLHEFCLI EAEMTKHMHV QKTHPILPTQ KHNFRRFSFQ TESYSVDDCC KLLPHVARSI  600
HLFFLLDLPF KTHINLVDIL PIYRRDPVIH EFFCHFNLLR VLAIFNRCVQ FDSFSLVITK  660
LFHLRYLRIE FYGDIPESIS DLQNLQTLIC HGYCSLPGKI WTMKNLRFIH TKGPSYLPSP  720
RTEHPMTRMP NLEEFSILCY TSCTNEVFCV IPNLKRLIIH LPLVLDEPSP QIFDMSRLTK  780
LEALKLSGQM FDMSRLTKLE ALKLSGSVRT VEPIKRFVFP TSLRRLSIKW CCYFDWADIS  840
STVMMLPNLE ELKLKSCVAN DVVWRMSDKD KFESLKLFLL DDVELGCWEA SSDNFPNLKR  900
LIMKRCNQLQ EIPADFGEIC TSESIELHDC GTTAEESARK IEQEQVDLGN NTLKIYIHKV  960
IMNGASCTKK P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6s2p_N	4e-23	307	552	3	344	NRC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782925.1	0.0	PREDICTED: putative late blight resistance protein homolog R1B-17
TrEMBL	M1DRT6	0.0	M1DRT6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400093366	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-49	TGACG motif-binding factor 4