PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02771.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 89aa    MW: 9544.32 Da    PI: 9.357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02771.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.45.8e-0911271127
                             GTS--TTTTT-SS-SSS CS
                  zf-CCCH 11 rtGtCkyGdrCkFaHgp 27
                              +G+Ck+G++CkF H++
  Sme2.5_02771.1_g00009.1 11 LSGFCKFGSSCKFDHPM 27
                             58*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.418528IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4625IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5629IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6927IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MMLLDCLKVL LSGFCKFGSS CKFDHPMGTV QYNSSASSLP DLPIAPYMLR SSFTLAPMLL  60
PDLQAGFVSG SKVFRSAVVK SGSPPLNLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754486e-60HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755216e-60HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359420.11e-31PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_009776617.11e-31PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_016506830.11e-31PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_016507418.11e-31PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_018633466.11e-31PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W912e-14C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1AT361e-31M1AT36_SOLTU; Uncharacterized protein
STRINGSolyc09g074640.2.17e-31(Solanum lycopersicum)
STRINGPGSC0003DMT4000296035e-31(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.26e-17C3H family protein