PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02826.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 216aa    MW: 24569.8 Da    PI: 5.0302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02826.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-1653102255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr++    +Wv+eIr+p   +k+ r++lg++ t+e Aa+a++ a+++l+g
  Sme2.5_02826.1_g00003.1  53 LYRGVRRRN-GDKWVCEIREP---NKKSRIWLGTYSTPEIAARAHDVAALALRG 102
                              69****877.9*********9...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-3052112No hitNo description
PfamPF008471.7E-1152102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3053112IPR001471AP2/ERF domain
PROSITE profilePS5103222.23453110IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2153112IPR016177DNA-binding domain
SMARTSM003807.8E-3053116IPR001471AP2/ERF domain
PRINTSPR003672.6E-105465IPR001471AP2/ERF domain
PRINTSPR003672.6E-1092112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDFEDDSSSS SDHEILDNKE KIIDISSCSM DINNVQFKRR AGRKKFKETR HPLYRGVRRR  60
NGDKWVCEIR EPNKKSRIWL GTYSTPEIAA RAHDVAALAL RGSNALLNFP DSAWSLPKAK  120
SSSPCDIQIA VLQVTKELIV SSPPSSEEPS CYNNSQKPKD DQVNSLVEFM DEEAMFNMPI  180
LIDSMAEGML LTPPAMKKGF HWDDVEEDVE FTLWKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1454110360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-14511101272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552644.11e-119PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLM1DGQ81e-123M1DGQ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000887951e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-46C-repeat-binding factor 4