PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02903.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 25224.2 Da PI: 4.9092

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02903.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.8e-18	23	73	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+ ++ +e+ +LA+ lgL+ rqV +WFqN+Ra++k Sme2.5_02903.1_g00007.1 23 RFTDEQVKLLESMFKIGTKIEPREKLKLARDLGLQPRQVAIWFQNKRARWK 73 7*************************************************9 PP
2	HD-ZIP_I/II	114.6	6.1e-37	21	110	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+++eqvklLE++F+ +k+ep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+ + e+L++e+e+L Sme2.5_02903.1_g00007.1 21 VKRFTDEQVKLLESMFKIGTKIEPREKLKLARDLGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSKFDNLNMQYESLKAEKERLL 106 58***********************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 el+ Sme2.5_02903.1_g00007.1 107 IELE 110 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.374	15	75	IPR001356	Homeobox domain
SMART	SM00389	7.5E-17	17	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-18	20	84	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-19	22	82	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-15	23	73	IPR001356	Homeobox domain
CDD	cd00086	2.06E-14	23	76	No hit	No description
PRINTS	PR00031	1.4E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	55	71	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.9E-13	75	115	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEPELETSNF KKPLKKKCEN VKRFTDEQVK LLESMFKIGT KIEPREKLKL ARDLGLQPRQ 60 VAIWFQNKRA RWKSKQLEHE YRILQSKFDN LNMQYESLKA EKERLLIELE TLNDQVENSN 120 ARGSTSQDSR DSELHTSPEN GFTDLELKDC SGCTNSRFGH KSVNEEEDDA IEGTDKFFTP 180 KEEAEFWNLE ELGDNNSLEH WCVGLGSISN SKLWDF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY368484	0.0	AY368484.1 Capsicum annuum HD-ZIP (HD-Zip) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350490.1	1e-129	PREDICTED: homeobox-leucine zipper protein ATHB-7-like
Swissprot	P46897	2e-36	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	M1BL44	1e-128	M1BL44_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400047622	1e-128	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	7e-39	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]