PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02911.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 221aa MW: 25691.3 Da PI: 6.7894

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02911.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	63.8	5.2e-20	10	126	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 f+ +P d el+++ L k v+gk+l+ +i +d+y+ ePw+L +++k++++F ++ kk+ ++r nr+t+ g W+++ k Sme2.5_02911.1_g00003.1 10 FHASPCDCELIMQ-LLKFVAGKSLPG--FIGFTDVYSKEPWELM---GESSKKTHYFLTQLKKK--DTRFNRTTRgGGSWSQQHKG 87 44469****77.667899999887..7999*******6...34455666666665554..4689997774789*** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++l++ ++ ++g k+tL f ++++p+ + +W+m+ey l Sme2.5_02911.1_g00003.1 88 KPILDEdEKLVIGYKRTLKFKHKKDPS-LNGRWMMKEYFL 126 *8455569****9888888.79******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.062	6	150	IPR003441	NAC domain
Pfam	PF02365	8.7E-11	9	125	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-20	12	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEIKENNVQF HASPCDCELI MQLLKFVAGK SLPGFIGFTD VYSKEPWELM GESSKKTHYF 60 LTQLKKKDTR FNRTTRGGGS WSQQHKGKPI LDEDEKLVIG YKRTLKFKHK KDPSLNGRWM 120 MKEYFLADSL LRQLKSNETK DFVICAIKKN PRSVIKGNAS EASDDVLEYK SFIDRVLQHM 180 ELETQEPKEE TDIFGGENQE PDWLSLLDFE DHALMQNCLN F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461097.1	2e-81	PREDICTED: uncharacterized protein LOC107784474, partial
TrEMBL	A0A1S3ZA51	4e-80	A0A1S3ZA51_TOBAC; uncharacterized protein LOC107784474
STRING	XP_009618980.1	4e-80	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9815	7	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	2e-13	NAC domain containing protein 41