PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02923.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21752 Da    PI: 9.2045
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02923.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-1554103150
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                              k+ie+ +  q  +skR+  i KKA+EL +LC+++va+++fs+t+++  y 
  Sme2.5_02923.1_g00002.1  54 KKIEDPISFQQFYSKRKDSIVKKANELVILCETDVALLMFSPTDQVTSYY 103
                              568888888888*********************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.2446106IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-1946105IPR002100Transcription factor, MADS-box
CDDcd002662.67E-1747125No hitNo description
SuperFamilySSF554551.83E-1947118IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-134868IPR002100Transcription factor, MADS-box
PfamPF003191.9E-1555102IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-136883IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-1383104IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAAQAKSGRP GLAQHLRYRL VVVIQGRLGY EFILISRFSS SLIYSMGRNK LVMKKIEDPI  60
SFQQFYSKRK DSIVKKANEL VILCETDVAL LMFSPTDQVT SYYSRGSIED VMLHVINQPN  120
ELNKRYYEPQ VDNISFVQEV DAYKQFLTSA MGRIQQSKAK LLSGEGFLQN GKEPVWDGSR  180
EETDQILVEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360573.12e-49PREDICTED: agamous-like MADS-box protein AGL66 isoform X2
RefseqXP_006360575.12e-49PREDICTED: agamous-like MADS-box protein AGL66
RefseqXP_006360576.12e-49PREDICTED: agamous-like MADS-box protein AGL66
RefseqXP_006360577.12e-49PREDICTED: agamous-like MADS-box protein AGL66
RefseqXP_015170382.12e-49PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
RefseqXP_015170383.12e-49PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
RefseqXP_015170384.12e-49PREDICTED: agamous-like MADS-box protein AGL66 isoform X1
TrEMBLM1CH621e-55M1CH62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673852e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-17AGAMOUS-like 104